Psy-Fer / blue-crabLinks
lossless nanopore pod5 <=> s/blow5 file conversion
☆40Updated last week
Alternatives and similar repositories for blue-crab
Users that are interested in blue-crab are comparing it to the libraries listed below
Sorting:
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆39Updated 3 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆42Updated 2 weeks ago
- Tumour-only somatic mutation calling using long reads☆27Updated 8 months ago
- ☆42Updated 2 weeks ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated last month
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- Transcript assembly and quantification for RNA-Seq☆8Updated 5 years ago
- WDL workflows for variant calling and assembly using ONT☆35Updated last month
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- a lexicographically-based GTF/GFF sorter☆35Updated 2 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆54Updated 2 weeks ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 4 months ago
- A versatile toolkit for k-mers with taxonomic information☆78Updated 11 months ago
- ☆28Updated 2 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Pan-Genomic Matching Statistics☆52Updated last year
- A simple toolkit for manipulating nanopore signal data☆18Updated 9 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 4 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- A battery of methylation tools for PacBio HiFi reads☆38Updated last month
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- ☆31Updated 10 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆54Updated last year