Psy-Fer / blue-crabLinks
lossless nanopore pod5 <=> s/blow5 file conversion
☆42Updated last month
Alternatives and similar repositories for blue-crab
Users that are interested in blue-crab are comparing it to the libraries listed below
Sorting:
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆37Updated 3 weeks ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated 2 months ago
- A streaming method for mapping nanopore raw signals☆32Updated 3 years ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆45Updated 2 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 7 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆32Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 5 years ago
- A simple toolkit for manipulating nanopore signal data☆18Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- A tool for de novo clustering of long transcriptomic reads☆15Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated last month
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆74Updated 3 weeks ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆45Updated 3 weeks ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆64Updated 3 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 6 months ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆61Updated 2 weeks ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆20Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆33Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago