Psy-Fer / blue-crabLinks
lossless nanopore pod5 <=> s/blow5 file conversion
☆44Updated 4 months ago
Alternatives and similar repositories for blue-crab
Users that are interested in blue-crab are comparing it to the libraries listed below
Sorting:
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 4 months ago
- A streaming method for mapping nanopore raw signals☆32Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated last month
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated 3 weeks ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 10 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆51Updated last month
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- ☆28Updated 3 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Updated 2 weeks ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 10 months ago
- ☆45Updated last month
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆65Updated last month
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- WDL workflows for variant calling and assembly using ONT☆38Updated 2 months ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆84Updated last month
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆66Updated 2 months ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 6 months ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated 4 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- ☆33Updated 3 years ago
- ☆30Updated last year
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆21Updated 10 months ago
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.☆38Updated 2 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 4 months ago