Psy-Fer / blue-crab
crab go snap snap
☆40Updated 2 weeks ago
Alternatives and similar repositories for blue-crab:
Users that are interested in blue-crab are comparing it to the libraries listed below
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆39Updated last month
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Tumour-only somatic mutation calling using long reads☆26Updated 6 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- Set of tools to manipulate and visualize modified base bam files☆54Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated last week
- Transcript assembly and quantification for RNA-Seq☆8Updated 5 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- ☆27Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- A battery of methylation tools for PacBio HiFi reads☆34Updated last month
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated 5 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 4 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A library and tool for accessing remote BLOW5 files.☆24Updated 6 months ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 5 months ago
- ☆30Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.☆34Updated 2 weeks ago
- A local-haplotagging-based small and structural variant caller☆74Updated last week
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆41Updated 2 months ago