Psy-Fer / blue-crabLinks
lossless nanopore pod5 <=> s/blow5 file conversion
☆44Updated 3 months ago
Alternatives and similar repositories for blue-crab
Users that are interested in blue-crab are comparing it to the libraries listed below
Sorting:
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated this week
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- A streaming method for mapping nanopore raw signals☆32Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 3 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆51Updated 9 months ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆65Updated last week
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- A local-haplotagging-based small and structural variant caller☆89Updated 3 weeks ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 9 months ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆50Updated 3 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 3 weeks ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆65Updated last month
- ☆27Updated 3 months ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- ☆30Updated last year
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆82Updated 3 weeks ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆37Updated last week
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Updated this week
- A battery of methylation tools for PacBio HiFi reads☆44Updated last week
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- ☆45Updated 3 weeks ago
- a lexicographically-based GTF/GFF sorter☆35Updated 7 months ago
- A gene fusion caller for long-read transcriptome sequencing data.☆22Updated last year
- Linear-time de novo Long Read Assembler☆41Updated last month