Psy-Fer / blue-crabView external linksLinks
lossless nanopore pod5 <=> s/blow5 file conversion
☆46Feb 3, 2026Updated last week
Alternatives and similar repositories for blue-crab
Users that are interested in blue-crab are comparing it to the libraries listed below
Sorting:
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆101Jan 28, 2026Updated 2 weeks ago
- A library and tool for accessing remote BLOW5 files.☆24Feb 5, 2026Updated last week
- Visualise and analyse nanopore (ONT) raw signals☆128Dec 12, 2025Updated 2 months ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆42Jan 23, 2026Updated 3 weeks ago
- A simple toolkit for manipulating nanopore signal data☆19Sep 24, 2024Updated last year
- slow5lib is a software library for reading & writing SLOW5 files.☆47Jan 28, 2026Updated 2 weeks ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆161Jan 29, 2026Updated 2 weeks ago
- Pod5: a high performance file format for nanopore reads.☆171Nov 19, 2025Updated 2 months ago
- ☆83Jan 6, 2025Updated last year
- A simplified version of Dorado built on top of S/BLOW5 format.☆31Feb 6, 2026Updated last week
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆121Feb 5, 2026Updated last week
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Dec 24, 2025Updated last month
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- (m)6A (I)dentification Using (N)anopor(E) (S)equencing☆19Nov 25, 2020Updated 5 years ago
- a tool for simulating nanopore raw signal data☆72Jan 30, 2026Updated 2 weeks ago
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated 10 months ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Aug 9, 2024Updated last year
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Dec 21, 2022Updated 3 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- long read RNA-seq quantification☆102Feb 4, 2026Updated last week
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Sep 29, 2021Updated 4 years ago
- Oxford Nanopore's Basecaller☆794Jan 13, 2026Updated last month
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 4 months ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆25May 10, 2025Updated 9 months ago
- ☆23Dec 12, 2025Updated 2 months ago
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆63Jan 1, 2026Updated last month
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆17Oct 13, 2025Updated 4 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆53Mar 5, 2025Updated 11 months ago
- Graph-based assembly phasing☆91Nov 25, 2025Updated 2 months ago
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated last year
- Open Human Genome Library☆60Dec 22, 2025Updated last month
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated last year
- Basecalling configuration prediction through FASTQ files☆32Nov 24, 2025Updated 2 months ago
- ☆18Mar 31, 2025Updated 10 months ago
- ☆19Nov 17, 2025Updated 2 months ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆41Dec 18, 2025Updated last month