nanoporetech / bonitoLinks
A PyTorch Basecaller for Oxford Nanopore Reads
☆427Updated last week
Alternatives and similar repositories for bonito
Users that are interested in bonito are comparing it to the libraries listed below
Sorting:
- Sequence correction provided by ONT Research☆486Updated 3 months ago
- PEPPER-Margin-DeepVariant☆253Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆698Updated 8 months ago
- the pangenome graph builder☆465Updated 3 months ago
- Plotting scripts for long read sequencing data☆511Updated 2 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆881Updated 6 months ago
- Genome assembly evaluation tool☆480Updated last year
- hybrid assembly pipeline for bacterial genomes☆625Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆541Updated last year
- Structural variation caller using third generation sequencing☆624Updated last week
- Mummer alignment tool☆535Updated 9 months ago
- adapter trimmer for Oxford Nanopore reads☆375Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆432Updated last month
- Oxford Nanopore's Basecaller☆752Updated last month
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆394Updated 3 weeks ago
- Official home of genome aligner based upon notion of Cactus graphs☆624Updated this week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆567Updated last month
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆291Updated last year
- A genome visualization python package for comparative genomics☆376Updated last month
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆314Updated last month
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆385Updated 5 months ago
- Gene cluster comparison figure generator☆623Updated 11 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆446Updated 10 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆279Updated 3 months ago
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆290Updated 10 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆359Updated last week
- A curated list of awesome nanopore analysis tools.☆300Updated 4 months ago
- Nanopore sequence read simulator☆285Updated 8 months ago
- An accurate GFF3/GTF lift over pipeline☆514Updated 2 years ago
- Align proteins to genomes with splicing and frameshift☆386Updated 2 months ago