bluenote-1577 / myloasmLinks
A new high-resolution long-read metagenome assembler for even noisy reads
☆93Updated 3 weeks ago
Alternatives and similar repositories for myloasm
Users that are interested in myloasm are comparing it to the libraries listed below
Sorting:
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 5 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆61Updated 3 months ago
- Plasmid analysis using rearrangement distances☆45Updated 2 weeks ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆39Updated last month
- Genome size estimation from long read overlaps☆60Updated 2 weeks ago
- Split k-mer analysis – version 2☆92Updated last month
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆30Updated last month
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 weeks ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆58Updated last year
- Recombination-free trees☆60Updated 2 weeks ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆41Updated 5 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆48Updated last week
- Evaluating Nanopore-based bacterial variant calling☆19Updated last month
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆24Updated last month
- Overview of our data for microbial genomic benchmarking☆24Updated this week
- Graph-based assembly phasing☆87Updated 4 months ago
- Remove human reads from a sequencing run☆39Updated last month
- Microbial agile accurate SNP Typer☆29Updated last year
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆31Updated 2 weeks ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆49Updated last month
- Colinear block visualisation tool☆31Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 4 months ago
- A tool for removing redundant genomes from a set of assemblies☆76Updated last week
- Split Kmer Analysis☆65Updated 3 years ago
- ☆24Updated 7 months ago
- More scalable dereplication for metagenome assembled genomes☆68Updated 3 weeks ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆65Updated 11 months ago