bluenote-1577 / myloasmLinks
A new high-resolution long-read metagenome assembler for even noisy reads
☆100Updated last month
Alternatives and similar repositories for myloasm
Users that are interested in myloasm are comparing it to the libraries listed below
Sorting:
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆43Updated 6 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 4 months ago
- Genome size estimation from long read overlaps☆62Updated last month
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Plasmid analysis using rearrangement distances☆46Updated last month
- Recombination-free trees☆60Updated last month
- Split k-mer analysis – version 2☆96Updated 2 weeks ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 2 months ago
- Colinear block visualisation tool☆31Updated last year
- Evaluating Nanopore-based bacterial variant calling☆20Updated 3 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- Bifrost graph gene caller.☆95Updated last month
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆51Updated last month
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆24Updated 3 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆43Updated 2 months ago
- Bacterial GWAS analysis☆45Updated 3 months ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- Graph-based assembly phasing☆87Updated 6 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆33Updated last month
- Overview of our data for microbial genomic benchmarking☆26Updated 3 weeks ago
- Gene-flank analysis tool☆33Updated 10 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆50Updated last month
- ☆24Updated 9 months ago