beebdev / HARULinks
Hardware Accelerated Read Until
☆16Updated 2 weeks ago
Alternatives and similar repositories for HARU
Users that are interested in HARU are comparing it to the libraries listed below
Sorting:
- De Bruijn graph construction for large k.☆17Updated 4 years ago
- Benchmarking pairwise aligners☆36Updated 8 months ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆27Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 2 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Basecalling configuration prediction through FASTQ files☆29Updated 4 months ago
- GBWT-based handle graph☆31Updated last week
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Fast and exact gap-affine partial order alignment☆54Updated last month
- GFA insert into GenomicSQLite☆48Updated 4 years ago
- A streaming method for mapping nanopore raw signals☆32Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated 11 months ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆55Updated last year
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- Optimized sequence graph implementations for graph genomics☆34Updated last week
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆55Updated last week
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated last month
- Find Unique genomic Regions☆30Updated last month
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Python language bindings for bwa☆11Updated 3 weeks ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 4 years ago