beebdev / HARU

Related projects: ⓘ

• PacificBiosciences / pancake
  ☆10Updated this week
• AntonBankevich / jumboDB
  De Bruijn graph construction for large k.
  ☆18Updated 3 years ago
• CMU-SAFARI / Scrooge
  Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…
  ☆37Updated last year
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆30Updated 5 months ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆16Updated 6 months ago
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated 3 months ago
• edawson / svaha
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆11Updated 6 months ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆27Updated 4 months ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 3 years ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆18Updated 4 years ago
• jslfree080 / bamscope
  A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)
  ☆10Updated 8 months ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 3 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated 5 months ago
• nf-core / genomeannotator
  Pipeline for the identification of (coding) gene structures in draft genomes.
  ☆18Updated 4 months ago
• wh-xu / Hyper-Gen
  HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors
  ☆9Updated 3 weeks ago
• osilander / bonito_benchmarks
  Benchmarking bonito basecaller using E. coli assemblies
  ☆11Updated 3 years ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated last year
• hcdenbakker / colorid
  Experiments with using BIGSI data structure for metagenomic and QC applications
  ☆18Updated last month
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆35Updated 5 months ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆22Updated 11 months ago
• bacpop / pp-sketchlib
  Library of sketching functions used by PopPUNK
  ☆30Updated 5 months ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 2 years ago
• dib-lab / kProcessor
  kProcessor: kmers processing framework.
  ☆11Updated 11 months ago
• HKU-BAL / Translocator
  Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…
  ☆13Updated 4 years ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated 3 months ago
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆17Updated last year
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆43Updated 2 months ago
• jdidion / pairwise-alignment
  Catalogue of pairwise alignment algorithms and benchmarks
  ☆25Updated last month
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated 6 months ago