beebdev / HARULinks
Hardware Accelerated Read Until
☆16Updated 3 months ago
Alternatives and similar repositories for HARU
Users that are interested in HARU are comparing it to the libraries listed below
Sorting:
- Basecalling configuration prediction through FASTQ files☆32Updated last month
- De Bruijn graph construction for large k.☆17Updated 4 years ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Benchmarking pairwise aligners☆36Updated 11 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated last week
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated 3 weeks ago
- A SIMD-accelerated library to compute random minimizers☆34Updated last week
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 5 months ago
- A long read simulator based on badread idea☆22Updated 3 years ago
- GBWT-based handle graph☆31Updated this week
- Filter of Pairwise Alignement☆44Updated 3 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- k-mers and the like☆22Updated last week
- Find Unique genomic Regions☆32Updated 2 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated last year
- A novel method for sequence similarity estimation☆28Updated last year
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Updated last year
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 4 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆39Updated 3 months ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆40Updated 3 weeks ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Updated 3 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆23Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Updated 2 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 9 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Updated last year