beebdev / HARU
Hardware Accelerated Read Until
☆14Updated last year
Alternatives and similar repositories for HARU:
Users that are interested in HARU are comparing it to the libraries listed below
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- Benchmarking pairwise aligners☆36Updated 9 months ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 2 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆25Updated last month
- Pipeline for the identification of (coding) gene structures in draft genomes.☆25Updated 8 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆34Updated 3 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- Population genetics analysis on VG☆16Updated 3 years ago
- Filter of Pairwise Alignement☆44Updated 2 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆13Updated 4 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 6 months ago
- Toolkit for manipulating FASTA and SAM files☆17Updated 10 months ago
- A FASTA/FASTQ format parser library☆20Updated 10 months ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆37Updated last year
- ☆13Updated last year
- exploring viral genome assembly with variation graph tools☆19Updated 4 years ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 2 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆18Updated 5 months ago
- Linear-time, low-memory construction of variation graphs☆18Updated 4 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated 7 months ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- Construct a Physical Map from Linked Reads☆18Updated 9 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆24Updated 4 months ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 6 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 5 years ago