Hardware Accelerated Read Until
☆18Sep 30, 2025Updated 9 months ago
Alternatives and similar repositories for HARU
Users that are interested in HARU are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Jun 4, 2026Updated last month
- Generate mutated sequence files from a reference genome.☆11Jun 12, 2026Updated last month
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Visualise and analyse nanopore (ONT) raw signals☆130Jun 11, 2026Updated last month
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆106Jan 28, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Nanopore raw signal segmentation and RNA modification estimation.☆13Mar 3, 2026Updated 4 months ago
- ☆12Dec 26, 2018Updated 7 years ago
- Minotour API, web and client code☆30Mar 28, 2026Updated 3 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last week
- ☆85Jan 6, 2025Updated last year
- ☆23Jan 18, 2026Updated 6 months ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- a tool for simulating nanopore raw signal data☆81Mar 4, 2026Updated 4 months ago
- Learning materials for the 3000788 Introduction to Computational Molecular Biology course☆24Jul 8, 2026Updated last week
- ☆15Dec 8, 2022Updated 3 years ago
- Tutorial for Metagenomics Analyses☆10Jun 16, 2020Updated 6 years ago
- ☆27Dec 29, 2020Updated 5 years ago
- Control an Illumina HiSeq 2500 System☆21May 21, 2026Updated 2 months ago
- ☆12May 6, 2021Updated 5 years ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- ☆30Dec 22, 2023Updated 2 years ago
- De novo clustering of long transcript reads into genes☆80Apr 27, 2025Updated last year
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 9 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 8 months ago
- A repository for generating strobemers and evalaution☆79Apr 16, 2024Updated 2 years ago
- Index kmtricks bf matrices☆49Jul 6, 2026Updated 2 weeks ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆47May 10, 2023Updated 3 years ago
- Protobuf and gRPC specifications for the MinKNOW API☆72Apr 29, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 4 months ago
- QC cutoffs for different genomes.☆17May 28, 2026Updated last month
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 3 years ago
- ☆12Apr 8, 2021Updated 5 years ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54Jun 22, 2026Updated 3 weeks ago