Clair3-RNA - a long-read small variant caller for RNA sequencing data
☆43Apr 16, 2026Updated last month
Alternatives and similar repositories for Clair3-RNA
Users that are interested in Clair3-RNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated 2 years ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆105Apr 8, 2026Updated last month
- ClairS - a deep-learning method for long-read somatic small variant calling☆108Apr 16, 2026Updated last month
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆91May 11, 2026Updated 2 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆92Apr 16, 2026Updated last month
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 4 months ago
- Gapless, reference-quality Southern Han Chinese genome assembly and annotation☆12Oct 24, 2022Updated 3 years ago
- An analysis pipeline for Nanopore direct-RNA sequencing☆13Jul 24, 2025Updated 10 months ago
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 2 years ago
- LongSom tool for long-reads☆12May 20, 2025Updated last year
- ☆85Jan 6, 2025Updated last year
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆363May 4, 2026Updated 3 weeks ago
- A chromosomal visualization package for python.☆15Apr 13, 2026Updated last month
- Visualise and analyse nanopore (ONT) raw signals☆129Dec 12, 2025Updated 5 months ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 4 months ago
- Detection of m6A from direct RNA-Seq data☆131May 19, 2025Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 10 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- ☆12Oct 13, 2021Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆39Apr 25, 2023Updated 3 years ago
- Repository☆10Oct 23, 2024Updated last year
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆76Apr 12, 2026Updated last month
- Methylation/modified base calling separated from basecalling.☆187Sep 17, 2024Updated last year
- A minimap2 frontend for PacBio native data formats☆216Mar 4, 2026Updated 2 months ago
- DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …☆306Mar 5, 2026Updated 2 months ago
- Transformer-based sequence correction method for genome assembly polishing☆104Mar 11, 2025Updated last year
- ☆21Apr 15, 2024Updated 2 years ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data