Alternatives and similar repositories for kmer_models:

Users that are interested in kmer_models are comparing it to the libraries listed below

• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆104Updated 5 months ago
• yukiteruono / pbsim3
  PBSIM3: a simulator for all types of PacBio and ONT long reads
  ☆73Updated 3 weeks ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆112Updated last month
• MBoemo / DNAscent
  Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
  ☆28Updated last week
• comprna / RATTLE
  Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
  ☆57Updated last year
• giesselmann / STRique
  Nanopore raw signal repeat detection pipeline
  ☆45Updated last year
• yukiteruono / pbsim2
  PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
  ☆72Updated last year
• nanoporetech / pyguppyclient
  Python client library for Guppy
  ☆31Updated 2 years ago
• Kirk3gaard / 2023-basecalling-benchmarks
  ☆28Updated last year
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated 5 months ago
• skovaka / uncalled4
  ☆45Updated 2 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆99Updated last month
• nanoporetech / fast5_research
  Fast5 API provided by ONT Research
  ☆21Updated 2 years ago
• epi2me-labs / modbam2bed
  ☆48Updated 6 months ago
• darelab2014 / Dinopore
  DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing
  ☆17Updated last year
• hasindu2008 / squigulator
  a tool for simulating nanopore raw signal data
  ☆66Updated 5 months ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated last year
• haotianteng / Xron
  Xron - an omni basecaller for ONT reads.
  ☆20Updated 3 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆114Updated last month
• dayzerodx / counterr
  ☆31Updated 10 months ago
• PacificBiosciences / jasmine
  Predict 5mC in PacBio HiFi reads
  ☆1Updated last month
• dietvin / pod5Viewer
  GUI for inspecting POD5 files
  ☆25Updated 2 months ago
• nanoporetech / flappie
  Flip-flop basecaller for Oxford Nanopore reads
  ☆99Updated 3 years ago
• Psy-Fer / SquiggleKit
  SquiggleKit: A toolkit for manipulating nanopore signal data
  ☆122Updated last year
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆88Updated 3 years ago
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆46Updated 2 years ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆52Updated 2 years ago
• al-mcintyre / mCaller
  A python program to call methylation (m6A in DNA) from nanopore signal data
  ☆46Updated 3 years ago
• LooseLab / bulkvis
  ☆46Updated 4 months ago