nanoporetech / kmer_models
Predictive kmer models for development use
☆56Updated last year
Alternatives and similar repositories for kmer_models
Users that are interested in kmer_models are comparing it to the libraries listed below
Sorting:
- Visualise and analyse nanopore (ONT) raw signals☆115Updated 3 months ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆74Updated 3 weeks ago
- ☆62Updated 4 months ago
- Read Until client library for Nanopore Sequencing☆104Updated 7 months ago
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆31Updated last month
- Assembled Genomes Compressor☆162Updated 5 months ago
- Variant calling tool for long-read sequencing data☆109Updated last month
- Pipeline to convert a haploid assembly into diploid☆100Updated 3 months ago
- ☆46Updated 8 months ago
- Research release basecalling models and configurations☆110Updated 10 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆72Updated last year
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆56Updated last year
- a tool for simulating nanopore raw signal data☆66Updated 7 months ago
- Nanopore raw signal repeat detection pipeline☆45Updated 2 years ago
- GUI for inspecting POD5 files☆28Updated 4 months ago
- ☆39Updated this week
- jupyter notebooks for Parker et al. eLife 2019☆8Updated 5 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆115Updated last month
- Flip-flop basecaller for Oxford Nanopore reads☆99Updated 3 years ago
- De novo assembly from Oxford Nanopore reads.☆83Updated 2 weeks ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- A local-haplotagging-based small and structural variant caller☆76Updated this week
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆122Updated 2 weeks ago
- Collection of tools for the analysis of CpG data☆81Updated 3 months ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆50Updated 2 months ago
- Fast and accurate coordinate conversion between assemblies☆112Updated last month
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆18Updated 2 years ago
- ☆112Updated last week
- Call select base modifications in PacBio HiFi reads☆7Updated 3 months ago