Alternatives and similar repositories for kmer_models

Users that are interested in kmer_models are comparing it to the libraries listed below

• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆121Updated last month
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆104Updated last year
• skovaka / uncalled4
  ☆76Updated 9 months ago
• hasindu2008 / squigulator
  a tool for simulating nanopore raw signal data
  ☆70Updated 2 weeks ago
• nanoporetech / flappie
  Flip-flop basecaller for Oxford Nanopore reads
  ☆100Updated 3 years ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆112Updated 6 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆116Updated 2 weeks ago
• MBoemo / DNAscent
  Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
  ☆32Updated last month
• nanoporetech / scrappie
  Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group
  ☆93Updated 3 years ago
• yukiteruono / pbsim3
  PBSIM3: a simulator for all types of PacBio and ONT long reads
  ☆83Updated 5 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆125Updated 2 months ago
• nanoporetech / taiyaki
  Training models for basecalling Oxford Nanopore reads
  ☆115Updated 3 years ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆85Updated this week
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆67Updated 6 months ago
• comprna / RATTLE
  Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
  ☆59Updated last year
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆103Updated 8 months ago
• refresh-bio / agc
  Assembled Genomes Compressor
  ☆168Updated 10 months ago
• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆178Updated last week
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆77Updated this week
• giesselmann / STRique
  Nanopore raw signal repeat detection pipeline
  ☆45Updated 2 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆114Updated 4 months ago
• yukiteruono / pbsim2
  PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
  ☆73Updated 2 years ago
• yangao07 / abPOA
  abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
  ☆129Updated this week
• Psy-Fer / SquiggleKit
  SquiggleKit: A toolkit for manipulating nanopore signal data
  ☆127Updated last year
• human-pangenomics / HPP_Year1_Data_Freeze_v1.0
  ☆60Updated 4 years ago
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆105Updated 4 months ago
• twolinin / longphase
  ☆117Updated last month
• marbl / HG002
  A complete diploid human genome
  ☆134Updated 2 weeks ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆103Updated 4 years ago
• al-mcintyre / mCaller
  A python program to call methylation (m6A in DNA) from nanopore signal data
  ☆47Updated 4 years ago