wdecoster / craminoLinks
A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
☆162Updated last week
Alternatives and similar repositories for cramino
Users that are interested in cramino are comparing it to the libraries listed below
Sorting:
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 5 months ago
- Yet another k-mer analyzer☆143Updated last year
- A tool for somatic structural variant calling using long reads☆146Updated last week
- Nanopore data assembler☆160Updated 3 years ago
- Research release basecalling models and configurations☆114Updated 4 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆127Updated last month
- Comparison of multiple long read datasets☆143Updated last month
- Constructing a pangenome gene graph☆195Updated 2 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Visualise and analyse nanopore (ONT) raw signals☆122Updated last month
- Tools for plotting methylation data in various ways☆160Updated last week
- accurate LiftOver tool for new genome assemblies☆135Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆188Updated 5 months ago
- Quality control tools for nanopore sequencing data☆110Updated 11 months ago
- Long read aligner☆115Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆203Updated 2 weeks ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆125Updated 2 months ago
- Create statistic summary of an Oxford Nanopore read dataset☆122Updated 2 years ago
- ☆165Updated last month
- A genome completeness evaluation tool based on miniprot☆222Updated 3 weeks ago
- Jasmine: SV Merging Across Samples☆227Updated 9 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆87Updated last month
- Structural Variant Identification Method using Genome Assemblies☆124Updated 3 years ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆200Updated last week
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- source code for EVM☆118Updated 10 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆103Updated 2 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆113Updated 4 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆159Updated 7 months ago
- Pairwise whole genome aligner☆191Updated this week