A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
☆187Jul 1, 2026Updated 3 weeks ago
Alternatives and similar repositories for cramino
Users that are interested in cramino are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆258Jul 1, 2026Updated 3 weeks ago
- Comparison of multiple long read datasets☆177Jul 1, 2026Updated 3 weeks ago
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated last year
- ☆17Jul 1, 2026Updated 3 weeks ago
- Minimal but speedy quality control for nanopore reads in Rust☆139Sep 16, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆22Jan 3, 2025Updated last year
- Genome browser and variant annotation☆395Jun 25, 2026Updated 3 weeks ago
- An overview of all nanopack tools☆291Jun 2, 2023Updated 3 years ago
- Successor of bwa-mem for short-read alignment☆306Updated this week
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆100Jan 28, 2026Updated 5 months ago
- A tool for somatic structural variant calling using long reads☆174Jun 8, 2026Updated last month
- quality filtering tool for long reads☆406Sep 17, 2025Updated 10 months ago
- WDL workflows for variant calling and assembly using ONT☆40Jun 30, 2026Updated 3 weeks ago
- Plotting scripts for long read sequencing data☆557Jun 15, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆224May 9, 2026Updated 2 months ago
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆257Jul 10, 2026Updated 2 weeks ago
- A bioinformatics tool for working with modified bases☆270Jul 14, 2026Updated last week
- Structural variation caller using third generation sequencing☆673Updated this week
- Wally: Visualization of aligned sequencing reads and contigs☆126Jul 10, 2026Updated 2 weeks ago
- Correcting errors in noisy long reads using variation graphs☆52Nov 17, 2022Updated 3 years ago
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 10 months ago
- Phased assembly variant caller☆142Dec 4, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆383Jul 9, 2026Updated 2 weeks ago
- Randomly subsample sequencing reads or alignments☆271Updated this week
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year
- Variant calling tool for long-read sequencing data☆118Mar 19, 2025Updated last year
- Sequence correction provided by ONT Research☆518May 20, 2026Updated 2 months ago
- Aligns short reads using dynamic seed size with strobemers☆203Updated this week
- Oxford Nanopore's Basecaller☆854Updated this week
- long read RNA-seq quantification☆116Updated this week
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆82Jul 17, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆404Apr 22, 2026Updated 3 months ago
- adapter trimmer for Oxford Nanopore reads☆385May 8, 2024Updated 2 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆865May 2, 2026Updated 2 months ago
- The D4 Quantitative Data Format☆173Nov 28, 2025Updated 7 months ago
- Create statistic summary of an Oxford Nanopore read dataset☆137Nov 4, 2022Updated 3 years ago
- Pipeline to convert a haploid assembly into diploid☆112Jan 23, 2025Updated last year
- expressions on VCFs☆93Mar 17, 2026Updated 4 months ago