slow5lib is a software library for reading & writing SLOW5 files.
☆48Jun 20, 2026Updated last week
Alternatives and similar repositories for slow5lib
Users that are interested in slow5lib are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆106Jan 28, 2026Updated 5 months ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆48Apr 30, 2026Updated 2 months ago
- Visualise and analyse nanopore (ONT) raw signals☆130Jun 11, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A simplified version of Dorado built on top of S/BLOW5 format.☆40Updated this week
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆164Mar 19, 2026Updated 3 months ago
- A library and tool for accessing remote BLOW5 files.☆24Jun 3, 2026Updated 3 weeks ago
- Predictive kmer models for development use☆64Jun 6, 2023Updated 3 years ago
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated 3 months ago
- ☆10Mar 11, 2025Updated last year
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆43Feb 13, 2026Updated 4 months ago
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆69Jan 1, 2026Updated 6 months ago
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- a tool for simulating nanopore raw signal data☆79Mar 4, 2026Updated 3 months ago
- Long read aligner☆114May 26, 2023Updated 3 years ago
- Pod5: a high performance file format for nanopore reads.☆175Mar 31, 2026Updated 3 months ago
- Nanopore raw signal segmentation and RNA modification estimation.☆13Mar 3, 2026Updated 3 months ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Dec 27, 2023Updated 2 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Genopo a.k.a. F5N - A nanopore sequencing analysis toolkit for Android smartphones https://nanoporetech.com☆10Aug 2, 2021Updated 4 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆27May 9, 2024Updated 2 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Nov 14, 2025Updated 7 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- fork of dorado that supports S/BLOW5☆13May 29, 2026Updated last month
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated last year
- ☆53Sep 27, 2025Updated 9 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Updated this week
- Methylation/modified base calling separated from basecalling.☆187Sep 17, 2024Updated last year
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆140Jun 23, 2024Updated 2 years ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28May 10, 2020Updated 6 years ago
- ☆85Jan 6, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Pan-Genomic Matching Statistics☆57Apr 3, 2024Updated 2 years ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆198Mar 8, 2022Updated 4 years ago
- Benchmark on adaptive banded algorithm☆19Feb 26, 2023Updated 3 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Jun 19, 2026Updated last week
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆67Apr 30, 2026Updated 2 months ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 7 months ago
- Very fast ONT basecaller☆52Jun 17, 2022Updated 4 years ago