Alternatives and similar repositories for slow5lib

Users that are interested in slow5lib are comparing it to the libraries listed below

• yukiteruono / pbsim2
  PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
  ☆73Updated 2 years ago
• Psy-Fer / buttery-eel
  The buttery eel - a slow5 guppy/dorado basecaller wrapper
  ☆41Updated last month
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆53Updated last year
• hasindu2008 / squigulator
  a tool for simulating nanopore raw signal data
  ☆69Updated 3 weeks ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆53Updated last year
• haowenz / sigmap
  A streaming method for mapping nanopore raw signals
  ☆32Updated 3 years ago
• hasindu2008 / slow5tools
  Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.
  ☆99Updated last month
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆27Updated 10 months ago
• ekimb / mapquik
  Efficient low-divergence mapping of long reads in minimizer space
  ☆66Updated last year
• Psy-Fer / blue-crab
  lossless nanopore pod5 <=> s/blow5 file conversion
  ☆42Updated last month
• bwa-mem2 / mm2-fast
  A versatile pairwise aligner for genomic and spliced nucleotide sequences
  ☆55Updated last year
• skovaka / uncalled4
  ☆76Updated 8 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆50Updated 6 months ago
• lbcb-sci / graphmap2
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆68Updated 3 years ago
• Kirk3gaard / 2023-basecalling-benchmarks
  ☆30Updated last year
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆49Updated 6 months ago
• seryrzu / unialigner
  ☆66Updated last year
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆80Updated 3 weeks ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆45Updated 3 weeks ago
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆78Updated last year
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆121Updated 2 weeks ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆76Updated last year
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆56Updated 2 months ago
• gsneha26 / SegAlign
  A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
  ☆70Updated last year
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆78Updated 5 months ago
• LooseLab / bulkvis
  ☆49Updated 10 months ago
• kjenike / panagram
  ☆66Updated 2 weeks ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆68Updated 3 months ago