hasindu2008 / slow5lib
slow5lib is a software library for reading & writing SLOW5 files.
☆41Updated 2 weeks ago
Alternatives and similar repositories for slow5lib:
Users that are interested in slow5lib are comparing it to the libraries listed below
- Tumour-only somatic mutation calling using long reads☆25Updated 3 months ago
- crab go snap snap☆35Updated this week
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆71Updated last year
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆35Updated this week
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated 11 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- A streaming method for mapping nanopore raw signals☆31Updated 3 years ago
- Pan-Genomic Matching Statistics☆48Updated 9 months ago
- ☆64Updated 9 months ago
- Find Unique genomic Regions☆29Updated 3 weeks ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 8 months ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 2 months ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 2 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆33Updated last month
- De novo clustering of long transcript reads into genes☆54Updated 3 years ago
- ☆45Updated 3 weeks ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated 8 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆35Updated 3 weeks ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 6 months ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆47Updated 4 years ago
- deduplicate FASTA and FASTQ files☆19Updated 2 years ago
- A versatile compressor of third generation sequencing reads.☆49Updated 10 months ago
- A tool for de novo clustering of long transcriptomic reads☆14Updated 2 years ago
- Benchmarking pairwise aligners☆36Updated 10 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- ☆46Updated 2 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago