hasindu2008 / slow5libLinks
slow5lib is a software library for reading & writing SLOW5 files.
☆47Updated last month
Alternatives and similar repositories for slow5lib
Users that are interested in slow5lib are comparing it to the libraries listed below
Sorting:
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆73Updated 2 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆54Updated last year
- Pan-Genomic Matching Statistics☆53Updated last year
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆40Updated 3 weeks ago
- a tool for simulating nanopore raw signal data☆68Updated 3 weeks ago
- A streaming method for mapping nanopore raw signals☆32Updated 3 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last week
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 3 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆54Updated last year
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆100Updated last week
- Efficient low-divergence mapping of long reads in minimizer space☆67Updated last year
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last month
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆27Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- A repository for generating strobemers and evalaution☆79Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆57Updated this week
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- ☆49Updated 9 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆58Updated last month
- Joint structural variant and copy number variant caller for HiFi sequencing data☆59Updated this week
- ☆30Updated last year
- GFA visualizer, GPU-accelerated using Vulkan☆73Updated 3 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆103Updated 11 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆76Updated 5 months ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago