hasindu2008 / slow5libLinks
slow5lib is a software library for reading & writing SLOW5 files.
☆46Updated 5 months ago
Alternatives and similar repositories for slow5lib
Users that are interested in slow5lib are comparing it to the libraries listed below
Sorting:
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated 2 months ago
- Pan-Genomic Matching Statistics☆52Updated last year
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆39Updated 2 months ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- a tool for simulating nanopore raw signal data☆66Updated 9 months ago
- ☆30Updated last year
- REINDEER REad Index for abuNDancE quERy☆58Updated 11 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A streaming method for mapping nanopore raw signals☆32Updated 3 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆38Updated 3 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- Fast and exact gap-affine partial order alignment☆51Updated 2 weeks ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- implicit pangenome graph☆61Updated last week
- Python bindings to spoa☆20Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated 2 weeks ago
- A library and tool for accessing remote BLOW5 files.☆24Updated 8 months ago
- Visualise and analyse nanopore (ONT) raw signals☆117Updated this week
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆72Updated last year
- Efficient low-divergence mapping of long reads in minimizer space☆67Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆54Updated last year
- A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043☆72Updated 10 months ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Efficient, parallel compression for terabyte-scale data☆47Updated last month
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 3 months ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- CAncer Standards Long-read Evaluation☆28Updated 4 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 weeks ago