☆85Jan 6, 2025Updated last year
Alternatives and similar repositories for uncalled4
Users that are interested in uncalled4 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Visualise and analyse nanopore (ONT) raw signals☆130Jun 11, 2026Updated last month
- Methylation/modified base calling separated from basecalling.☆188Sep 17, 2024Updated last year
- Detection of m6A from direct RNA-Seq data☆133May 19, 2025Updated last year
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Mar 19, 2026Updated 4 months ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆44Feb 13, 2026Updated 5 months ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆106Jan 28, 2026Updated 6 months ago
- a tool for simulating nanopore raw signal data☆81Mar 4, 2026Updated 4 months ago
- direct RNA nanopore sequencing barcode design and demultiplexing☆21Apr 26, 2026Updated 3 months ago
- ☆20Nov 17, 2025Updated 8 months ago
- GUI for inspecting POD5 files☆35Dec 19, 2024Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆48Apr 30, 2026Updated 2 months ago
- ☆20Mar 31, 2025Updated last year
- Predictive kmer models for development use☆64Jun 6, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Oxford Nanopore's Basecaller☆854Jul 22, 2026Updated last week
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Updated this week
- ☆23Jan 18, 2026Updated 6 months ago
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆39Aug 2, 2024Updated last year
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 9 months ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Jul 8, 2022Updated 4 years ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 4 months ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Xron - an omni basecaller for ONT reads.☆24Nov 27, 2024Updated last year
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆45Jun 7, 2026Updated last month
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆18Oct 13, 2025Updated 9 months ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆43Apr 16, 2026Updated 3 months ago
- A bioinformatics tool for working with modified bases☆271Jul 14, 2026Updated 2 weeks ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Jun 20, 2026Updated last month
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆22Nov 20, 2022Updated 3 years ago
- A simplified version of Dorado built on top of S/BLOW5 format.☆41Updated this week
- ClairS: a deep-learning method for long-read tumor–normal pair somatic small variant calling☆112Jul 17, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆258Jul 10, 2026Updated 2 weeks ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆383Jul 9, 2026Updated 2 weeks ago
- ☆14Oct 5, 2023Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆52Nov 17, 2022Updated 3 years ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆107Jun 25, 2026Updated last month
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆50Jul 21, 2026Updated last week