☆82Jan 6, 2025Updated last year
Alternatives and similar repositories for uncalled4
Users that are interested in uncalled4 are comparing it to the libraries listed below
Sorting:
- Visualise and analyse nanopore (ONT) raw signals☆128Dec 12, 2025Updated 2 months ago
- Methylation/modified base calling separated from basecalling.☆184Sep 17, 2024Updated last year
- ☆19Nov 17, 2025Updated 3 months ago
- Detection of m6A from direct RNA-Seq data☆131May 19, 2025Updated 9 months ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆161Jan 29, 2026Updated last month
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆14Nov 15, 2021Updated 4 years ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆103Jan 28, 2026Updated last month
- lossless nanopore pod5 <=> s/blow5 file conversion☆46Feb 3, 2026Updated last month
- ☆22Jan 18, 2026Updated last month
- A local-haplotagging-based small and structural variant caller☆95Feb 27, 2026Updated last week
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆42Feb 13, 2026Updated 3 weeks ago
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆40Dec 23, 2025Updated 2 months ago
- a tool for simulating nanopore raw signal data☆73Updated this week
- Oxford Nanopore's Basecaller☆801Feb 19, 2026Updated 2 weeks ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- GUI for inspecting POD5 files☆34Dec 19, 2024Updated last year
- Hardware Accelerated Read Until☆17Sep 30, 2025Updated 5 months ago
- direct RNA nanopore sequencing barcode design and demultiplexing☆20Jan 8, 2026Updated 2 months ago
- A bioinformatics tool for working with modified bases☆254Jan 19, 2026Updated last month
- ClairS - a deep-learning method for long-read somatic small variant calling☆105Jan 22, 2026Updated last month
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Jul 8, 2022Updated 3 years ago
- ☆19Mar 31, 2025Updated 11 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆241Feb 3, 2026Updated last month
- RNA modifications detection from Nanopore dRNA-Seq data☆88Updated this week
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆39Aug 2, 2024Updated last year
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- fork of dorado that supports S/BLOW5☆12Jan 8, 2026Updated 2 months ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Updated this week
- Tumour-only somatic mutation calling using long reads☆28Oct 28, 2024Updated last year
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 2 weeks ago
- Telomere-to-Telomere diploid Indian Genome☆14Feb 11, 2026Updated 3 weeks ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆341Feb 26, 2026Updated last week
- Xron - an omni basecaller for ONT reads.☆23Nov 27, 2024Updated last year
- Correcting errors in noisy long reads using variation graphs☆50Nov 17, 2022Updated 3 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 5 months ago
- ☆27Nov 14, 2025Updated 3 months ago
- snapper☆13Jul 8, 2024Updated last year
- ☆46Nov 21, 2025Updated 3 months ago