Wrapper to read fast5, slow5, blow5 and pod5 files.
☆13Mar 26, 2025Updated last year
Alternatives and similar repositories for read5
Users that are interested in read5 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Codes and results from ONT dRNA benchmarking☆12Nov 28, 2023Updated 2 years ago
- breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitution…☆11Aug 1, 2026Updated 2 months ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆18Oct 13, 2025Updated last year
- Predictive kmer models for development use☆64Jun 6, 2023Updated 3 years ago
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Mar 11, 2025Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆50Aug 26, 2026Updated 2 months ago
- NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files☆10Dec 22, 2020Updated 5 years ago
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆18Jun 4, 2026Updated 4 months ago
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- Nanopore raw signal segmentation and RNA modification estimation.☆13Mar 3, 2026Updated 7 months ago
- a tool for simulating nanopore raw signal data☆83Mar 4, 2026Updated 7 months ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆12Sep 26, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Visualise and analyse nanopore (ONT) raw signals☆130Jun 11, 2026Updated 4 months ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆70Jan 1, 2026Updated 9 months ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆21Sep 23, 2026Updated last month
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆45Feb 13, 2026Updated 8 months ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆107Aug 26, 2026Updated 2 months ago
- A library and tool for accessing remote BLOW5 files.☆25Jun 3, 2026Updated 4 months ago
- ☆19Mar 31, 2025Updated last year
- slow5lib is a software library for reading & writing SLOW5 files.☆49Aug 24, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- (m)6A (I)dentification Using (N)anopor(E) (S)equencing☆19Nov 25, 2020Updated 5 years ago
- Source code for the DeepViral paper☆12Mar 17, 2021Updated 5 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Aug 21, 2026Updated 2 months ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- ☆14Updated this week
- ☆14Sep 11, 2023Updated 3 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆23Oct 12, 2022Updated 4 years ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆22Jul 8, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Xron - an omni basecaller for ONT reads.☆24Nov 27, 2024Updated last year
- Pod5: a high performance file format for nanopore reads.☆178Oct 8, 2026Updated 3 weeks ago
- Passage is a PArallel SAmpler GEnerator. The user specifies a hierarchical Bayesian model and data using the Passage EDSL, and Passage ge…☆22Mar 8, 2020Updated 6 years ago
- ☆14Oct 20, 2026Updated last week
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 4 years ago
- GPU CRF-CTC decoding for nanopore basecalling☆16Oct 17, 2026Updated last week
- ☆31Jul 28, 2025Updated last year