Alternatives and similar repositories for read5

Users that are interested in read5 are comparing it to the libraries listed below

• hasindu2008 / squigulator
  a tool for simulating nanopore raw signal data
  ☆70Updated 2 months ago
• nanoporetech / kmer_models
  Predictive kmer models for development use
  ☆62Updated 2 years ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆124Updated 2 months ago
• rki-mf1 / breakfast
  breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitution…
  ☆11Updated 4 months ago
• Kirk3gaard / 2023-basecalling-benchmarks
  ☆30Updated last year
• yukiteruono / pbsim2
  PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
  ☆73Updated 2 years ago
• skovaka / uncalled4
  ☆79Updated 10 months ago
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆68Updated this week
• lrslab / nanoCEM
  "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.
  ☆17Updated last month
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆88Updated last week
• Psy-Fer / blue-crab
  lossless nanopore pod5 <=> s/blow5 file conversion
  ☆44Updated 3 months ago
• Psy-Fer / buttery-eel
  The buttery eel - a slow5 guppy/dorado basecaller wrapper
  ☆41Updated 3 months ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆82Updated this week
• haowenz / sigmap
  A streaming method for mapping nanopore raw signals
  ☆32Updated 4 years ago
• PacificBiosciences / kineticsTools
  Tools for detecting DNA modifications from single molecule, real-time sequencing data
  ☆26Updated 3 years ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆35Updated last year
• fanglab / nanodisco
  nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…
  ☆71Updated 3 years ago
• ArtRand / signalAlign
  HMM-HDP models for MinION signal alignments
  ☆46Updated 8 years ago
• kjenike / panagram
  ☆68Updated 3 weeks ago
• hasindu2008 / slow5lib
  slow5lib is a software library for reading & writing SLOW5 files.
  ☆47Updated 4 months ago
• nanoporetech / pyguppyclient
  Python client library for Guppy
  ☆32Updated 3 years ago
• jts / assembly_accuracy
  tools for assessing the accuracy of genome assemblies
  ☆35Updated last year
• a-slide / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆34Updated 4 years ago
• nanoporetech / flappie
  Flip-flop basecaller for Oxford Nanopore reads
  ☆99Updated 3 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆47Updated 5 years ago
• wdecoster / nanolyse
  Remove lambda phage reads from a fastq file
  ☆29Updated 2 years ago
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated 2 years ago
• dietvin / pod5Viewer
  GUI for inspecting POD5 files
  ☆34Updated 11 months ago
• MBoemo / DNAscent
  Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
  ☆34Updated last month
• imsuneth / realfreq
  Realtime base modification frequency tool
  ☆12Updated 2 months ago