Alternatives and similar repositories for remora

Users that are interested in remora are comparing it to the libraries listed below

• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆212Updated 2 weeks ago
• wdecoster / chopper
  ☆209Updated 3 weeks ago
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆298Updated 3 weeks ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 3 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆172Updated last year
• epi2me-labs / wf-human-variation
  ☆133Updated 2 weeks ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆158Updated 6 months ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆160Updated 2 weeks ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆173Updated 4 years ago
• nanoporetech / pod5-file-format
  Pod5: a high performance file format for nanopore reads.
  ☆161Updated 3 months ago
• nanoporetech / ont_fast5_api
  Oxford Nanopore Technologies fast5 API software
  ☆154Updated last year
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆144Updated 3 weeks ago
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆104Updated 11 months ago
• lbcb-sci / herro
  HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …
  ☆225Updated 2 months ago
• marbl / Winnowmap
  Long read / genome alignment software
  ☆297Updated 9 months ago
• nanoporetech / tombo
  Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
  ☆234Updated 2 years ago
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆202Updated 6 months ago
• nanoporetech / taiyaki
  Training models for basecalling Oxford Nanopore reads
  ☆115Updated 3 years ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆173Updated 4 years ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆157Updated 2 months ago
• nanoporetech / megalodon
  Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…
  ☆204Updated 2 years ago
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆174Updated last month
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆160Updated 3 years ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆233Updated 7 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆123Updated last month
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆284Updated 10 months ago
• TobyBaril / EarlGrey
  Earl Grey: A fully automated TE curation and annotation pipeline
  ☆178Updated this week
• LooseLab / readfish
  CLI tool for flexible and fast adaptive sampling on ONT sequencers
  ☆185Updated 4 months ago
• hasindu2008 / f5c
  Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)
  ☆154Updated 7 months ago