Methylation/modified base calling separated from basecalling.
☆188Sep 17, 2024Updated last year
Alternatives and similar repositories for remora
Users that are interested in remora are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A bioinformatics tool for working with modified bases☆272Jul 14, 2026Updated 3 weeks ago
- Oxford Nanopore's Basecaller☆858Jul 30, 2026Updated last week
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆205May 4, 2023Updated 3 years ago
- ☆85Jan 6, 2025Updated last year
- A PyTorch Basecaller for Oxford Nanopore Reads☆436Feb 20, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 3 years ago
- Pod5: a high performance file format for nanopore reads.☆176Jul 6, 2026Updated last month
- Research release basecalling models and configurations☆120May 20, 2026Updated 2 months ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆62Jul 21, 2026Updated 3 weeks ago
- Xron - an omni basecaller for ONT reads.☆24Nov 27, 2024Updated last year
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Mar 19, 2026Updated 4 months ago
- Set of tools to manipulate and visualize modified base bam files☆62Aug 2, 2022Updated 4 years ago
- Visualise and analyse nanopore (ONT) raw signals☆130Jun 11, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆106Jan 28, 2026Updated 6 months ago
- Signal-level algorithms for MinION data☆600Aug 5, 2023Updated 3 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆387Jul 9, 2026Updated last month
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆232May 4, 2023Updated 3 years ago
- Automatic DNA methylation detection from nanopore tools and their consensus model☆78May 22, 2023Updated 3 years ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 3 years ago
- Detection of m6A from direct RNA-Seq data☆133May 19, 2025Updated last year
- SquiggleKit: A toolkit for manipulating nanopore signal data☆129Feb 16, 2024Updated 2 years ago
- Structural variation caller using third generation sequencing☆672Jul 20, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆10Mar 11, 2025Updated last year
- Plotting tools for nanopore methylation data☆95Aug 3, 2026Updated last week
- ☆53Sep 27, 2025Updated 10 months ago
- Tools for plotting methylation data in various ways☆196Jun 13, 2026Updated last month
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 3 years ago
- Training models for basecalling Oxford Nanopore reads☆116Jan 13, 2022Updated 4 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- HMM-HDP models for MinION signal alignments☆47Apr 10, 2017Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆20Mar 31, 2025Updated last year
- Predictive kmer models for development use☆64Jun 6, 2023Updated 3 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated 5 months ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆75May 20, 2022Updated 4 years ago
- DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications☆104Mar 8, 2023Updated 3 years ago
- ☆13Jun 3, 2026Updated 2 months ago