nanoporetech / remoraLinks
Methylation/modified base calling separated from basecalling.
☆180Updated last year
Alternatives and similar repositories for remora
Users that are interested in remora are comparing it to the libraries listed below
Sorting:
- A bioinformatics tool for working with modified bases☆214Updated last month
- Oxford Nanopore Technologies fast5 API software☆154Updated last year
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆304Updated 2 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆171Updated last year
- ☆134Updated last week
- Pod5: a high performance file format for nanopore reads.☆165Updated last week
- ☆212Updated 2 weeks ago
- Research release basecalling models and configurations☆114Updated 4 months ago
- Jasmine: SV Merging Across Samples☆227Updated 9 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆159Updated 7 months ago
- Tools for plotting methylation data in various ways☆160Updated last week
- A minimap2 frontend for PacBio native data formats☆204Updated 3 weeks ago
- A tool for somatic structural variant calling using long reads☆146Updated last week
- Fast and accurately polish the genome generated by long reads.☆234Updated 9 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204Updated 2 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆155Updated last week
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆117Updated 3 months ago
- Structural Variant Identification Method using Long Reads☆175Updated 4 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆125Updated 2 months ago
- Long read / genome alignment software☆300Updated 11 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆181Updated 3 weeks ago
- Visualise and analyse nanopore (ONT) raw signals☆122Updated last month
- Ultra-fast preprocessing and quality control for long-read sequencing data☆185Updated last month
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆235Updated 2 years ago
- Read Until client library for Nanopore Sequencing☆104Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆277Updated 8 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 2 months ago
- 3D de novo assembly (3D DNA) pipeline☆216Updated last year
- Nanopore data assembler☆160Updated 3 years ago