nanoporetech / remoraLinks
Methylation/modified base calling separated from basecalling.
☆177Updated 10 months ago
Alternatives and similar repositories for remora
Users that are interested in remora are comparing it to the libraries listed below
Sorting:
- A bioinformatics tool for working with modified bases☆204Updated this week
- Oxford Nanopore Technologies fast5 API software☆154Updated last year
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆287Updated this week
- ☆200Updated 2 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆154Updated 4 months ago
- Pod5: a high performance file format for nanopore reads.☆152Updated last month
- ☆130Updated last week
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆222Updated last month
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆151Updated 5 months ago
- Research release basecalling models and configurations☆114Updated last month
- Fast and accurately polish the genome generated by long reads.☆227Updated 6 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆170Updated last year
- Jasmine: SV Merging Across Samples☆217Updated 6 months ago
- Structural Variant Identification Method using Long Reads☆172Updated 4 years ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆162Updated last week
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204Updated 2 years ago
- Read Until client library for Nanopore Sequencing☆104Updated 9 months ago
- ☆212Updated 5 months ago
- a long read simulator that can imitate many types of read problems☆228Updated 11 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆177Updated last week
- A minimap2 frontend for PacBio native data formats☆201Updated 4 months ago
- A tool for somatic structural variant calling using long reads☆138Updated last week
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Using Deep Learning to predict gene annotations☆202Updated last month
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆155Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆141Updated 3 years ago
- Visualise and analyse nanopore (ONT) raw signals☆117Updated this week
- Training models for basecalling Oxford Nanopore reads☆115Updated 3 years ago
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆183Updated 2 months ago