guangzhaocs / SegPoreLinks
SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.
☆11Updated this week
Alternatives and similar repositories for SegPore
Users that are interested in SegPore are comparing it to the libraries listed below
Sorting:
- Xron - an omni basecaller for ONT reads.☆22Updated 7 months ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆15Updated 2 months ago
- Nanopore direct RNA basecaller☆11Updated 2 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated 11 months ago
- Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing☆15Updated 8 months ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 4 months ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Updated 9 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆18Updated 2 years ago
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Updated 3 years ago
- A simple toolkit for manipulating nanopore signal data☆18Updated 9 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated 2 months ago
- ☆9Updated last year
- ☆14Updated last year
- ☆68Updated 5 months ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Updated 2 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- ☆21Updated 2 years ago
- a tool for simulating nanopore raw signal data☆66Updated 9 months ago
- Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing☆9Updated 4 years ago
- Predictive kmer models for development use☆58Updated 2 years ago
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Updated 3 months ago
- ☆28Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆56Updated 5 months ago
- Super-fast and accurate demultiplexing of direct RNA-seq runs.☆13Updated 2 weeks ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆20Updated last week
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆50Updated 3 months ago
- Scoring GT/AG sites for improving spliced alignment☆41Updated 2 weeks ago
- Yet another nanopore modification comparison tool☆12Updated 3 years ago