SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.
☆13Mar 3, 2026Updated 3 weeks ago
Alternatives and similar repositories for SegPore
Users that are interested in SegPore are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A simple toolkit for manipulating nanopore signal data☆19Mar 14, 2026Updated last week
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Sep 1, 2025Updated 6 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆44Jul 19, 2024Updated last year
- direct RNA nanopore sequencing barcode design and demultiplexing☆20Mar 3, 2026Updated 3 weeks ago
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆17Oct 13, 2025Updated 5 months ago
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- ☆10Mar 11, 2025Updated last year
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆129Dec 12, 2025Updated 3 months ago
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Sep 29, 2021Updated 4 years ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Sep 26, 2024Updated last year
- Hardware Accelerated Read Until☆17Sep 30, 2025Updated 5 months ago
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding☆14Aug 27, 2025Updated 7 months ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Nov 17, 2025Updated 4 months ago
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆13Mar 18, 2026Updated last week
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆39Aug 2, 2024Updated last year
- ☆14Oct 5, 2023Updated 2 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing☆15Aug 27, 2025Updated 7 months ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- An interpretable machine learning algorithm to predict disordered protein phase separation based on biophysical interactions☆13Aug 2, 2022Updated 3 years ago
- slow5lib is a software library for reading & writing SLOW5 files.☆47Feb 24, 2026Updated last month
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆163Nov 7, 2024Updated last year
- NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files☆10Dec 22, 2020Updated 5 years ago
- ☆15Sep 14, 2021Updated 4 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated 3 weeks ago
- a tool for simulating nanopore raw signal data☆75Mar 4, 2026Updated 3 weeks ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 2 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Dec 21, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A curated list of awesome nanopore analysis tools.☆306Jul 2, 2025Updated 8 months ago
- Confidence Estimates with KalmanNet☆12Oct 6, 2021Updated 4 years ago
- Coding-Potential Assessment Tool using an alignment-free logistic regression model☆16Feb 29, 2024Updated 2 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- Compares the performance effect of 'noexcept' to an implicit exception specification☆19Oct 15, 2024Updated last year
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated last year