guangzhaocs / SegPore
SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.
☆11Updated 2 weeks ago
Alternatives and similar repositories for SegPore
Users that are interested in SegPore are comparing it to the libraries listed below
Sorting:
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 9 months ago
- Xron - an omni basecaller for ONT reads.☆21Updated 5 months ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 2 months ago
- ☆10Updated last year
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Updated 3 years ago
- ☆14Updated last year
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Updated 7 months ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Updated last year
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆18Updated 2 years ago
- Predictive kmer models for development use☆56Updated last year
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆14Updated last month
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated last year
- Nanopore direct RNA basecaller☆11Updated 2 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- ☆9Updated 3 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆51Updated 2 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing☆9Updated 3 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- Super-fast and accurate demultiplexing of direct RNA-seq runs.☆13Updated 2 months ago
- Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing☆14Updated 7 months ago
- ☆30Updated last year
- ☆28Updated last year
- ☆62Updated 4 months ago
- ☆33Updated 2 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆46Updated 3 years ago
- This repository contains the code developed for the NanOlympicsMod project.☆10Updated last year
- Variant calling tool for long-read sequencing data☆109Updated last month
- Deep learning embedding for nucleotide sequences☆18Updated last month
- Tool package to perform in-silico CRISPR analysis and assessment☆25Updated last year