Alternatives and similar repositories for squigulator:

Users that are interested in squigulator are comparing it to the libraries listed below

• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆111Updated 2 weeks ago
• skovaka / uncalled4
  ☆44Updated last month
• yukiteruono / pbsim3
  PBSIM3: a simulator for all types of PacBio and ONT long reads
  ☆70Updated this week
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆96Updated 3 weeks ago
• rrwick / August-2019-consensus-accuracy-update
  A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
  ☆58Updated 5 years ago
• kjenike / panagram
  ☆61Updated last week
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆55Updated 4 months ago
• Psy-Fer / buttery-eel
  The buttery eel - a slow5 guppy/dorado basecaller wrapper
  ☆38Updated this week
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆39Updated 2 months ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated last year
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆85Updated 6 months ago
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆103Updated 4 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆107Updated 7 months ago
• Kirk3gaard / 2023-basecalling-benchmarks
  ☆28Updated last year
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆93Updated this week
• nanoporetech / kmer_models
  Predictive kmer models for development use
  ☆54Updated last year
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆44Updated 3 weeks ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆90Updated last year
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆100Updated 4 months ago
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• qjiangzhao / TEtrimmer
  TEtrimmer: a novel tool to automate manual curation of transposable elements
  ☆65Updated 3 weeks ago
• daewoooo / SVbyEye
  ☆75Updated 4 months ago
• epi2me-labs / wf-basecalling
  ☆35Updated 2 weeks ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆71Updated 2 months ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆69Updated 3 years ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆104Updated 2 weeks ago
• yukiteruono / pbsim2
  PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
  ☆71Updated last year
• lh3 / yak
  Yet another k-mer analyzer
  ☆126Updated 10 months ago
• dietvin / pod5Viewer
  GUI for inspecting POD5 files
  ☆25Updated last month
• rrwick / MinION-desktop
  Scripts and programs for the Holt Lab's MinION desktop
  ☆32Updated 4 years ago