Alternatives and similar repositories for squigulator:

Users that are interested in squigulator are comparing it to the libraries listed below

• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆115Updated 3 months ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆108Updated last month
• yukiteruono / pbsim3
  PBSIM3: a simulator for all types of PacBio and ONT long reads
  ☆74Updated 2 weeks ago
• nanoporetech / kmer_models
  Predictive kmer models for development use
  ☆55Updated last year
• skovaka / uncalled4
  ☆59Updated 4 months ago
• Psy-Fer / buttery-eel
  The buttery eel - a slow5 guppy/dorado basecaller wrapper
  ☆39Updated last month
• yukiteruono / pbsim2
  PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
  ☆72Updated last year
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 3 months ago
• Kirk3gaard / 2023-basecalling-benchmarks
  ☆30Updated last year
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆74Updated last week
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆63Updated last month
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆50Updated last year
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆57Updated last week
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆7Updated 3 months ago
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆40Updated 5 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆100Updated 7 months ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆33Updated last year
• rrwick / August-2019-consensus-accuracy-update
  A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
  ☆59Updated 5 years ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆94Updated 2 months ago
• epi2me-labs / wf-basecalling
  ☆39Updated 3 weeks ago
• mourisl / centrifuger
  Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
  ☆58Updated this week
• dayzerodx / counterr
  ☆31Updated last year
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆87Updated 9 months ago
• dietvin / pod5Viewer
  GUI for inspecting POD5 files
  ☆27Updated 4 months ago
• refresh-bio / agc
  Assembled Genomes Compressor
  ☆162Updated 5 months ago
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆83Updated 2 months ago
• MBoemo / DNAscent
  Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
  ☆31Updated last month
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆52Updated last year
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆110Updated 10 months ago
• Psy-Fer / blue-crab
  lossless nanopore pod5 <=> s/blow5 file conversion
  ☆40Updated 3 weeks ago