a tool for simulating nanopore raw signal data
☆73Jan 30, 2026Updated last month
Alternatives and similar repositories for squigulator
Users that are interested in squigulator are comparing it to the libraries listed below
Sorting:
- A simple toolkit for manipulating nanopore signal data☆19Sep 24, 2024Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆128Dec 12, 2025Updated 2 months ago
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Nov 17, 2025Updated 3 months ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆42Feb 13, 2026Updated 2 weeks ago
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated 11 months ago
- A simplified version of Dorado built on top of S/BLOW5 format.☆31Feb 13, 2026Updated 2 weeks ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆17Oct 13, 2025Updated 4 months ago
- ☆82Jan 6, 2025Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆46Feb 3, 2026Updated last month
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆161Jan 29, 2026Updated last month
- Simple-to-use interactive comparison of two bacterial genomes☆26Jan 30, 2026Updated last month
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆42Feb 23, 2026Updated last week
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆103Jan 28, 2026Updated last month
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆65Jan 1, 2026Updated 2 months ago
- Quality control for phylogenetic analyses☆13Feb 23, 2026Updated last week
- a long read simulator that can imitate many types of read problems☆267Jul 22, 2024Updated last year
- Hardware Accelerated Read Until☆17Sep 30, 2025Updated 5 months ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Methylation/modified base calling separated from basecalling.☆182Sep 17, 2024Updated last year
- ☆26Updated this week
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆240Feb 3, 2026Updated last month
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- ☆30Jul 28, 2025Updated 7 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Updated this week
- Genome size estimation from long read overlaps☆81Feb 19, 2026Updated last week
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 3 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Sep 26, 2024Updated last year
- Oxford Nanopore's Basecaller☆800Feb 19, 2026Updated last week
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆53Feb 4, 2026Updated 3 weeks ago
- Bioinformatics curated workflows that use Biocontainers tools☆19Jun 11, 2019Updated 6 years ago
- Evaluating Nanopore-based bacterial variant calling☆21Jul 23, 2025Updated 7 months ago
- Xron - an omni basecaller for ONT reads.☆23Nov 27, 2024Updated last year
- The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.☆123Oct 20, 2020Updated 5 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Feb 11, 2026Updated 2 weeks ago
- ☆13Jun 10, 2025Updated 8 months ago