hasindu2008 / squigulatorLinks
a tool for simulating nanopore raw signal data
☆66Updated 8 months ago
Alternatives and similar repositories for squigulator
Users that are interested in squigulator are comparing it to the libraries listed below
Sorting:
- Visualise and analyse nanopore (ONT) raw signals☆116Updated 4 months ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆76Updated last month
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆39Updated 2 months ago
- Copy number caller for long read data including SNV utilization☆65Updated 2 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 4 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 8 months ago
- ☆63Updated 5 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 6 months ago
- Predictive kmer models for development use☆56Updated 2 years ago
- ☆30Updated last year
- Call select base modifications in PacBio HiFi reads☆7Updated 4 months ago
- A local-haplotagging-based small and structural variant caller☆78Updated 3 weeks ago
- GUI for inspecting POD5 files☆29Updated 5 months ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆59Updated 5 years ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆72Updated last year
- Read Until client library for Nanopore Sequencing☆104Updated 8 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆107Updated last week
- ☆40Updated 3 weeks ago
- Variant calling tool for long-read sequencing data☆110Updated 2 months ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆41Updated last year
- Tiberius is a deep learning gene finder.☆61Updated this week
- ☆62Updated last week
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆102Updated this week
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆31Updated 2 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- FastOMA is a scalable software package to infer orthology relationship.☆76Updated this week
- ☆31Updated last year
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆95Updated 3 months ago