a tool for simulating nanopore raw signal data
☆78Mar 4, 2026Updated last month
Alternatives and similar repositories for squigulator
Users that are interested in squigulator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated last month
- Visualise and analyse nanopore (ONT) raw signals☆129Dec 12, 2025Updated 4 months ago
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Nov 17, 2025Updated 5 months ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆43Feb 13, 2026Updated 2 months ago
- A simplified version of Dorado built on top of S/BLOW5 format.☆36Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated last year
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆163Mar 19, 2026Updated last month
- ☆83Jan 6, 2025Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆47Feb 3, 2026Updated 2 months ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆18Oct 13, 2025Updated 6 months ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆105Jan 28, 2026Updated 3 months ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆68Jan 1, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- slow5lib is a software library for reading & writing SLOW5 files.☆47Apr 17, 2026Updated 2 weeks ago
- Methylation/modified base calling separated from basecalling.☆186Sep 17, 2024Updated last year
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- ☆10Mar 11, 2025Updated last year
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- a long read simulator that can imitate many types of read problems☆282Apr 22, 2026Updated last week
- Hardware Accelerated Read Until☆17Sep 30, 2025Updated 7 months ago
- A fully featured MinKNOW simulator for testing read until experiments.☆25Apr 28, 2025Updated last year
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆31Jul 28, 2025Updated 9 months ago
- Quality control for phylogenetic analyses☆13Updated this week
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆250Apr 13, 2026Updated 2 weeks ago
- The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.☆123Oct 20, 2020Updated 5 years ago
- Genome size estimation from long read overlaps☆85Apr 13, 2026Updated 2 weeks ago
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 3 years ago
- A library and tool for accessing remote BLOW5 files.☆24Feb 5, 2026Updated 2 months ago
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆13Mar 3, 2026Updated last month
- ☆22Jan 18, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆44Apr 24, 2026Updated last week
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Sep 26, 2024Updated last year
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 3 months ago
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 7 months ago
- Oxford Nanopore's Basecaller☆820Feb 19, 2026Updated 2 months ago