"nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.
☆18Oct 13, 2025Updated 6 months ago
Alternatives and similar repositories for nanoCEM
Users that are interested in nanoCEM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11May 11, 2025Updated 11 months ago
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated last year
- This project is designed to find the potential modifications in bacterial genomes.☆15Nov 6, 2024Updated last year
- ☆10Mar 11, 2025Updated last year
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Codes and results from ONT dRNA benchmarking☆11Nov 28, 2023Updated 2 years ago
- A de novo modification detection tool that targets current features based on 004kit for prokaryotes☆22Jul 15, 2025Updated 9 months ago
- An analysis pipeline for Nanopore direct-RNA sequencing☆13Jul 24, 2025Updated 8 months ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Sep 26, 2024Updated last year
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated last month
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆13Mar 3, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- GPU CRF-CTC decoding for nanopore basecalling☆14Apr 2, 2026Updated 2 weeks ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- ☆20Mar 31, 2025Updated last year
- ☆14Oct 5, 2023Updated 2 years ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 2 years ago
- a tool for simulating nanopore raw signal data☆77Mar 4, 2026Updated last month
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆163Mar 19, 2026Updated 3 weeks ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Dec 21, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 3 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- Visualise and analyse nanopore (ONT) raw signals☆129Dec 12, 2025Updated 4 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆47Feb 3, 2026Updated 2 months ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆14Nov 15, 2021Updated 4 years ago
- fork of dorado that supports S/BLOW5☆12Jan 8, 2026Updated 3 months ago
- A simplified version of Dorado built on top of S/BLOW5 format.☆35Updated this week
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆68Jan 1, 2026Updated 3 months ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆43Feb 13, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 7 months ago
- ☆24Dec 24, 2022Updated 3 years ago
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding☆14Aug 27, 2025Updated 7 months ago
- ☆31Jul 28, 2025Updated 8 months ago
- ☆13Jun 10, 2025Updated 10 months ago
- ☆12Nov 18, 2024Updated last year