Alternatives and similar repositories for nanoCEM

Users that are interested in nanoCEM are comparing it to the libraries listed below

• weir12 / DENA
  Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.
  ☆22Updated 3 years ago
• comprna / radian
  Nanopore direct RNA basecaller
  ☆11Updated 3 years ago
• novoalab / m6ABasecaller
  An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…
  ☆18Updated 2 months ago
• bartongroup / yanocomp
  Yet another nanopore modification comparison tool
  ☆12Updated 3 years ago
• Maggi-Chen / FusionSeeker
  A gene fusion caller for long-read transcriptome sequencing data.
  ☆20Updated last year
• skovaka / uncalled4
  ☆79Updated 10 months ago
• guangzhaocs / SegPore
  SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.
  ☆12Updated 2 months ago
• haowenz / sigmap
  A streaming method for mapping nanopore raw signals
  ☆32Updated 4 years ago
• shilpagarg / DipAsm
  ☆79Updated 5 years ago
• WGLab / DeepMod2
  DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
  ☆54Updated 8 months ago
• comprna / riser
  Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing
  ☆15Updated 2 months ago
• gaoyubang / nanom6A
  ☆23Updated 2 years ago
• haotianteng / Xron
  Xron - an omni basecaller for ONT reads.
  ☆22Updated 11 months ago
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated last year
• hasindu2008 / squigulator
  a tool for simulating nanopore raw signal data
  ☆70Updated last month
• darelab2014 / Dinopore
  DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing
  ☆18Updated 2 years ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆15Updated 9 months ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• awjga / PORE-cupine
  First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing
  ☆14Updated 2 years ago
• biodlab / RODAN
  A fully convolutional architecture for basecalling nanopore RNA sequencing data
  ☆11Updated last year
• al-mcintyre / mCaller
  A python program to call methylation (m6A in DNA) from nanopore signal data
  ☆47Updated 4 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• nanoporetech / kmer_models
  Predictive kmer models for development use
  ☆62Updated 2 years ago
• LabShengLi / nanome
  NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)
  ☆33Updated 3 weeks ago
• WGLab / NanoMod
  NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data
  ☆38Updated 3 years ago
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆48Updated 2 years ago
• nanoporetech / fast5mod
  Extract modifed base call information from Guppy Fast5 files.
  ☆14Updated 3 years ago
• cerebis / sim3C
  Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)
  ☆20Updated last year
• TheJacksonLaboratory / Picky
  Structural Variants Pipeline for Long Reads
  ☆44Updated 7 years ago
• comprna / RATTLE
  Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
  ☆59Updated last year