Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.
☆106Aug 26, 2026Updated 3 weeks ago
Alternatives and similar repositories for slow5tools
Users that are interested in slow5tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- slow5lib is a software library for reading & writing SLOW5 files.☆49Aug 24, 2026Updated 3 weeks ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆50Aug 26, 2026Updated 3 weeks ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Aug 21, 2026Updated last month
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆45Feb 13, 2026Updated 7 months ago
- Visualise and analyse nanopore (ONT) raw signals☆130Jun 11, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated 6 months ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Methylation/modified base calling separated from basecalling.☆189Sep 17, 2024Updated 2 years ago
- Predictive kmer models for development use☆64Jun 6, 2023Updated 3 years ago
- ☆84Jan 6, 2025Updated last year
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Sep 12, 2026Updated last week
- SquiggleKit: A toolkit for manipulating nanopore signal data☆130Feb 16, 2024Updated 2 years ago
- A simplified version of Dorado built on top of S/BLOW5 format.☆42Sep 8, 2026Updated 2 weeks ago
- a tool for simulating nanopore raw signal data☆81Mar 4, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Detection of m6A from direct RNA-Seq data☆134May 19, 2025Updated last year
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 11 months ago
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated last year
- ☆10Mar 11, 2025Updated last year
- Oxford Nanopore's Basecaller☆875Sep 3, 2026Updated 2 weeks ago
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆198Feb 25, 2026Updated 6 months ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆436Feb 20, 2026Updated 7 months ago
- Oxford Nanopore Technologies fast5 API software☆155Feb 27, 2024Updated 2 years ago
- A library and tool for accessing remote BLOW5 files.☆25Jun 3, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated last year
- Pod5: a high performance file format for nanopore reads.☆177Updated this week
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- ☆19Mar 31, 2025Updated last year
- A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.☆112May 10, 2024Updated 2 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 3 years ago
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆70Jan 1, 2026Updated 8 months ago
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Apr 20, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- Flip-flop basecaller for Oxford Nanopore reads☆97Jan 13, 2022Updated 4 years ago
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated last month
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- Raw nanopore signal mapper that enables real-time targeted sequencing☆532Mar 5, 2024Updated 2 years ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆527May 20, 2026Updated 4 months ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆232May 4, 2023Updated 3 years ago