hasindu2008 / slow5toolsLinks
Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.
☆101Updated this week
Alternatives and similar repositories for slow5tools
Users that are interested in slow5tools are comparing it to the libraries listed below
Sorting:
- Visualise and analyse nanopore (ONT) raw signals☆125Updated last week
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆69Updated 3 years ago
- Research release basecalling models and configurations☆117Updated 6 months ago
- Long read aligner☆115Updated 2 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Updated last year
- ☆80Updated 11 months ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆74Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆105Updated this week
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆102Updated last month
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆163Updated this week
- ☆80Updated 5 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆71Updated 3 years ago
- Analysis components from Oxford Nanopore Research☆96Updated last year
- Variant calling tool for long-read sequencing data☆117Updated 9 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆34Updated 2 months ago
- a tool for simulating nanopore raw signal data☆70Updated 2 months ago
- A tool for Racon polishing of miniasm assemblies☆78Updated 3 months ago
- slow5lib is a software library for reading & writing SLOW5 files.☆47Updated 5 months ago
- Aligns short reads using dynamic seed size with strobemers☆185Updated this week
- ☆46Updated this week
- RNA modifications detection from Nanopore dRNA-Seq data☆87Updated 3 months ago
- Read Until client library for Nanopore Sequencing☆107Updated last year
- Pipeline to convert a haploid assembly into diploid☆108Updated 10 months ago
- Nanopore data assembler☆162Updated 3 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 5 years ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆86Updated 7 months ago
- A local-haplotagging-based small and structural variant caller☆90Updated last week