hasindu2008 / slow5toolsLinks
Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.
☆98Updated last week
Alternatives and similar repositories for slow5tools
Users that are interested in slow5tools are comparing it to the libraries listed below
Sorting:
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆67Updated 2 years ago
- Aligns short reads using dynamic seed size with strobemers☆169Updated last week
- Research release basecalling models and configurations☆110Updated 2 weeks ago
- Visualise and analyse nanopore (ONT) raw signals☆116Updated 4 months ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆72Updated last year
- A tool for Racon polishing of miniasm assemblies☆75Updated this week
- Long read aligner☆115Updated 2 years ago
- Nanopore data assembler☆156Updated 3 years ago
- A fast K-mer counter for high-fidelity shotgun datasets☆129Updated this week
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆94Updated last month
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 8 months ago
- List of genome assembly tools☆65Updated this week
- Pipeline to convert a haploid assembly into diploid☆100Updated 4 months ago
- ☆39Updated 3 weeks ago
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆31Updated 2 months ago
- ☆112Updated last month
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆76Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 8 months ago
- Analysis components from Oxford Nanopore Research☆93Updated 9 months ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆57Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆54Updated last year
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- ☆61Updated 5 months ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆125Updated last year
- Toolkit for calling structural variants using short or long reads☆104Updated 2 weeks ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆151Updated 2 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 4 years ago
- Read Until client library for Nanopore Sequencing☆104Updated 8 months ago