hasindu2008 / slow5toolsLinks
Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.
☆102Updated 2 weeks ago
Alternatives and similar repositories for slow5tools
Users that are interested in slow5tools are comparing it to the libraries listed below
Sorting:
- Long read aligner☆114Updated 2 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆107Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆122Updated 4 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Updated 3 years ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆74Updated 2 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆128Updated 2 months ago
- Research release basecalling models and configurations☆117Updated 8 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Updated 3 weeks ago
- ☆83Updated last year
- Variant calling tool for long-read sequencing data☆117Updated 10 months ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆103Updated 2 months ago
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆35Updated 3 months ago
- Analysis components from Oxford Nanopore Research☆96Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 4 years ago
- ☆32Updated 2 months ago
- Plotting tools for nanopore methylation data☆94Updated 6 months ago
- Pipeline to convert a haploid assembly into diploid☆111Updated last year
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Updated 5 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Updated this week
- Aligns short reads using dynamic seed size with strobemers☆192Updated this week
- A local-haplotagging-based small and structural variant caller☆94Updated 3 weeks ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆168Updated last week
- ☆81Updated 5 years ago
- a tool for simulating nanopore raw signal data☆72Updated last week
- Yet another k-mer analyzer☆158Updated last month
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆56Updated last year
- A tool for Racon polishing of miniasm assemblies☆78Updated 5 months ago