nanoporetech / modkitLinks
A bioinformatics tool for working with modified bases
☆222Updated 2 months ago
Alternatives and similar repositories for modkit
Users that are interested in modkit are comparing it to the libraries listed below
Sorting:
- ☆219Updated 2 weeks ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆312Updated last month
- ☆139Updated 3 weeks ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆195Updated 2 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆176Updated last year
- Methylation/modified base calling separated from basecalling.☆179Updated last year
- ☆219Updated 9 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆232Updated last month
- Jasmine: SV Merging Across Samples☆230Updated 10 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- Whole Genome Alignment Tools☆211Updated last week
- A minimap2 frontend for PacBio native data formats☆205Updated this week
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 3 months ago
- Tools for plotting methylation data in various ways☆164Updated this week
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Nanopore demultiplexing, QC and alignment pipeline☆214Updated last month
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆282Updated 9 months ago
- An ultra-fast and efficient genomic tool for coverage calculation☆161Updated 7 months ago
- Fast and accurately polish the genome generated by long reads.☆234Updated 10 months ago
- Long read / genome alignment software☆305Updated last year
- Any Way to Show Multi genomic Synteny☆210Updated 4 months ago
- Tool to plot synteny and structural rearrangements between genomes☆329Updated 7 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆164Updated last week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated last year
- Constructing a pangenome gene graph☆198Updated 3 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆165Updated 4 months ago
- ☆107Updated last month
- Structural Variant Identification Method using Long Reads☆178Updated 4 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 3 years ago