Alternatives and similar repositories for modkit

Users that are interested in modkit are comparing it to the libraries listed below

• jtlovell / GENESPACE
  ☆209Updated 4 months ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆138Updated 3 years ago
• wdecoster / chopper
  ☆194Updated last month
• epi2me-labs / wf-human-variation
  ☆126Updated 2 weeks ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆306Updated last month
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆138Updated this week
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆225Updated 4 months ago
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆189Updated last month
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆202Updated last year
• TobyBaril / EarlGrey
  Earl Grey: A fully automated TE curation and annotation pipeline
  ☆170Updated last week
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆201Updated last week
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆279Updated last week
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆214Updated last month
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆149Updated 3 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆164Updated last year
• epi2me-labs / wf-transcriptomes
  ☆94Updated 2 weeks ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆215Updated 5 months ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆270Updated 4 months ago
• lbcb-sci / herro
  HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …
  ☆215Updated 2 weeks ago
• kcleal / gw
  Genome browser and variant annotation
  ☆304Updated this week
• ncbi / egapx
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆135Updated 2 months ago
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆212Updated last year
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆230Updated 4 years ago
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆301Updated last year
• BrooksLabUCSC / flair
  Full-Length Alternative Isoform analysis of RNA
  ☆228Updated last week
• c-zhou / yahs
  Yet another Hi-C scaffolding tool
  ☆152Updated 7 months ago
• wyp1125 / MCScanX
  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
  ☆254Updated 5 months ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆339Updated last year
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆386Updated last month