A bioinformatics tool for working with modified bases
☆281Jul 14, 2026Updated 3 months ago
Alternatives and similar repositories for modkit
Users that are interested in modkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Oxford Nanopore's Basecaller☆883Sep 3, 2026Updated last month
- Methylation/modified base calling separated from basecalling.☆189Sep 17, 2024Updated 2 years ago
- Pod5: a high performance file format for nanopore reads.☆178Oct 8, 2026Updated 3 weeks ago
- Tools for plotting methylation data in various ways☆200Oct 10, 2026Updated 2 weeks ago
- Aggregate modified-base calls from BAM files into bedMethyl for downstream methylation analysis☆53Sep 27, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆181Jul 20, 2026Updated 3 months ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆61Jul 21, 2026Updated 3 months ago
- ☆262Oct 1, 2026Updated 3 weeks ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆396Updated this week
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Aug 21, 2026Updated 2 months ago
- ☆27Nov 14, 2025Updated 11 months ago
- Detection of m6A from direct RNA-Seq data☆133May 19, 2025Updated last year
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆190Oct 1, 2026Updated 3 weeks ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆38Apr 10, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- ☆37Oct 7, 2026Updated 3 weeks ago
- Plotting tools for nanopore methylation data☆96Oct 19, 2026Updated last week
- Visualise and analyse nanopore (ONT) raw signals☆130Jun 11, 2026Updated 4 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆174Mar 25, 2026Updated 7 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Oct 11, 2026Updated 2 weeks ago
- Structural variation caller using third generation sequencing☆685Oct 18, 2026Updated last week
- Signal-level algorithms for MinION data☆601Aug 5, 2023Updated 3 years ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆267Sep 16, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14May 2, 2025Updated last year
- Research release basecalling models and configurations☆121Sep 7, 2026Updated last month
- A tool for somatic structural variant calling using long reads☆181Jun 8, 2026Updated 4 months ago
- Variant calling tool for long-read sequencing data☆119Mar 19, 2025Updated last year
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆45Apr 16, 2026Updated 6 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,261May 19, 2026Updated 5 months ago
- Splitting of sequence reads by internal adapter sequence search☆50May 30, 2023Updated 3 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 3 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆58Mar 5, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Collection of tools for the analysis of CpG data☆115Jul 9, 2025Updated last year
- Methylation Phasing for Nanopore Sequencing☆51Mar 5, 2023Updated 3 years ago
- ☆36Aug 18, 2024Updated 2 years ago
- ☆52Apr 10, 2026Updated 6 months ago
- A curated list of awesome nanopore analysis tools.☆337May 20, 2026Updated 5 months ago
- ☆85Jan 6, 2025Updated last year
- PEPPER-Margin-DeepVariant☆261Jan 12, 2024Updated 2 years ago