Alternatives and similar repositories for dorado

Users that are interested in dorado are comparing it to the libraries listed below

• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆880Updated 6 months ago
• chhylp123 / hifiasm
  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
  ☆698Updated 8 months ago
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆486Updated 3 months ago
• ComparativeGenomicsToolkit / cactus
  Official home of genome aligner based upon notion of Cactus graphs
  ☆622Updated this week
• marbl / canu
  A single molecule sequence assembler for genomes large and small.
  ☆695Updated this week
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆511Updated 2 months ago
• bwa-mem2 / bwa-mem2
  The next version of bwa-mem
  ☆795Updated last month
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆625Updated last year
• mummer4 / mummer
  Mummer alignment tool
  ☆535Updated 9 months ago
• ablab / quast
  Genome assembly evaluation tool
  ☆480Updated last year
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆375Updated last year
• DerrickWood / kraken2
  The second version of the Kraken taxonomic sequence classification system
  ☆846Updated last week
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆538Updated last year
• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆624Updated last week
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆567Updated 3 weeks ago
• ablab / spades
  SPAdes Genome Assembler
  ☆877Updated last week
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆432Updated 3 weeks ago
• tseemann / prokka
  Rapid prokaryotic genome annotation
  ☆941Updated last year
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆813Updated 4 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆669Updated 5 months ago
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆396Updated last year
• NBISweden / AGAT
  Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
  ☆541Updated 2 months ago
• tanghaibao / jcvi
  Python library to facilitate genome assembly, annotation, and comparative genomics
  ☆871Updated last week
• usadellab / Trimmomatic
  ☆274Updated last month
• tseemann / abricate
  Mass screening of contigs for antimicrobial and virulence genes
  ☆450Updated last year
• tseemann / snippy
  Rapid haploid variant calling and core genome alignment
  ☆551Updated last year
• bactopia / bactopia
  A flexible pipeline for complete analysis of bacterial genomes
  ☆485Updated last week
• pangenome / pggb
  the pangenome graph builder
  ☆465Updated 3 months ago
• rrwick / Bandage
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆654Updated 2 years ago
• s-andrews / FastQC
  A quality control analysis tool for high throughput sequencing data
  ☆552Updated 2 weeks ago