Oxford Nanopore's Basecaller
☆800Feb 19, 2026Updated last week
Alternatives and similar repositories for dorado
Users that are interested in dorado are comparing it to the libraries listed below
Sorting:
- Pod5: a high performance file format for nanopore reads.☆172Nov 19, 2025Updated 3 months ago
- A bioinformatics tool for working with modified bases☆252Jan 19, 2026Updated last month
- Methylation/modified base calling separated from basecalling.☆182Sep 17, 2024Updated last year
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆240Feb 3, 2026Updated last month
- Sequence correction provided by ONT Research☆500Dec 8, 2025Updated 2 months ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆428Feb 20, 2026Updated last week
- Visualise and analyse nanopore (ONT) raw signals☆128Dec 12, 2025Updated 2 months ago
- ☆237Updated this week
- Plotting scripts for long read sequencing data☆534Dec 4, 2025Updated 3 months ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆337Updated this week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,128Feb 13, 2026Updated 2 weeks ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆905May 2, 2025Updated 10 months ago
- Signal-level algorithms for MinION data☆594Aug 5, 2023Updated 2 years ago
- Structural variation caller using third generation sequencing☆636Dec 18, 2025Updated 2 months ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆161Jan 29, 2026Updated last month
- ☆49Dec 15, 2025Updated 2 months ago
- quality filtering tool for long reads☆395Sep 17, 2025Updated 5 months ago
- ☆82Jan 6, 2025Updated last year
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆103Jan 28, 2026Updated last month
- a short-read polishing tool for long-read assemblies☆207Sep 19, 2025Updated 5 months ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- adapter trimmer for Oxford Nanopore reads☆382May 8, 2024Updated last year
- Research release basecalling models and configurations☆117May 21, 2025Updated 9 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆172Feb 11, 2026Updated 3 weeks ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆61Mar 5, 2025Updated 11 months ago
- A curated list of awesome nanopore analysis tools.☆307Jul 2, 2025Updated 8 months ago
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆194Feb 25, 2026Updated last week
- Oxford Nanopore Technologies fast5 API software☆154Feb 27, 2024Updated 2 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆743Mar 18, 2025Updated 11 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆238Dec 29, 2023Updated 2 years ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆221Sep 6, 2025Updated 5 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆46Feb 3, 2026Updated last month
- ☆152Jan 22, 2026Updated last month
- Nanopore demultiplexing, QC and alignment pipeline☆219Nov 20, 2025Updated 3 months ago
- Splitting of sequence reads by internal adapter sequence search☆51May 30, 2023Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆220Feb 23, 2026Updated last week
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 2 years ago
- Variant calling tool for long-read sequencing data☆117Mar 19, 2025Updated 11 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆382Feb 24, 2026Updated last week