Pod5: a high performance file format for nanopore reads.
☆172Nov 19, 2025Updated 3 months ago
Alternatives and similar repositories for pod5-file-format
Users that are interested in pod5-file-format are comparing it to the libraries listed below
Sorting:
- Oxford Nanopore's Basecaller☆800Feb 19, 2026Updated last week
- A bioinformatics tool for working with modified bases☆252Jan 19, 2026Updated last month
- Methylation/modified base calling separated from basecalling.☆182Sep 17, 2024Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆46Feb 3, 2026Updated last month
- Visualise and analyse nanopore (ONT) raw signals☆128Dec 12, 2025Updated 2 months ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆161Jan 29, 2026Updated last month
- A PyTorch Basecaller for Oxford Nanopore Reads☆428Feb 20, 2026Updated last week
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆103Jan 28, 2026Updated last month
- Sequence correction provided by ONT Research☆500Dec 8, 2025Updated 2 months ago
- slow5lib is a software library for reading & writing SLOW5 files.☆47Feb 24, 2026Updated last week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated last year
- Research release basecalling models and configurations☆117May 21, 2025Updated 9 months ago
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- ☆237Updated this week
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 2 years ago
- Plotting scripts for long read sequencing data☆534Dec 4, 2025Updated 3 months ago
- Protobuf and gRPC specifications for the MinKNOW API☆68Oct 29, 2025Updated 4 months ago
- Oxford Nanopore Technologies fast5 API software☆154Feb 27, 2024Updated 2 years ago
- Plotting tools for nanopore methylation data☆95Jul 28, 2025Updated 7 months ago
- VBZ compression plugin for nanopore signal data☆43Apr 7, 2025Updated 10 months ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆234May 4, 2023Updated 2 years ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Correcting errors in noisy long reads using variation graphs☆50Nov 17, 2022Updated 3 years ago
- Read Until client library for Nanopore Sequencing☆109Sep 25, 2024Updated last year
- Signal-level algorithms for MinION data☆594Aug 5, 2023Updated 2 years ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆905May 2, 2025Updated 10 months ago
- Nanopore sequence read simulator☆291Feb 3, 2026Updated last month
- Variant calling tool for long-read sequencing data☆117Mar 19, 2025Updated 11 months ago
- Minimal but speedy quality control for nanopore reads in Rust☆137Sep 16, 2024Updated last year
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Dec 21, 2022Updated 3 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆118Jun 4, 2023Updated 2 years ago
- ☆82Jan 6, 2025Updated last year
- adapter trimmer for Oxford Nanopore reads☆382May 8, 2024Updated last year
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Jul 8, 2022Updated 3 years ago
- HMM-HDP models for MinION signal alignments☆46Apr 10, 2017Updated 8 years ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆61Mar 5, 2025Updated 11 months ago
- ☆15Jun 27, 2024Updated last year