Alternatives and similar repositories for pod5-file-format:

Users that are interested in pod5-file-format are comparing it to the libraries listed below

• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆163Updated last week
• wdecoster / chopper
  ☆160Updated 4 months ago
• nanoporetech / remora
  Methylation/modified base calling separated from basecalling.
  ☆163Updated 4 months ago
• epi2me-labs / wf-human-variation
  ☆109Updated last month
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆113Updated 6 months ago
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆103Updated 3 months ago
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆143Updated last week
• lbcb-sci / herro
  HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …
  ☆201Updated last month
• nanoporetech / ont_fast5_api
  Oxford Nanopore Technologies fast5 API software
  ☆152Updated 10 months ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆132Updated 3 years ago
• epi2me-labs / wf-transcriptomes
  ☆81Updated 2 weeks ago
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆252Updated 2 weeks ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆138Updated last year
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆112Updated 3 weeks ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆136Updated last week
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆104Updated 7 months ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆131Updated last month
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆113Updated this week
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆187Updated last month
• jtlovell / GENESPACE
  ☆196Updated 5 months ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆292Updated 2 months ago
• nanoporetech / taiyaki
  Training models for basecalling Oxford Nanopore reads
  ☆115Updated 3 years ago
• marbl / HG002
  A complete diploid human genome
  ☆106Updated last week
• epi2me-labs / wf-basecalling
  ☆36Updated last month
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆178Updated last month
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆200Updated 2 months ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆195Updated last year
• wdecoster / nanoQC
  Quality control tools for nanopore sequencing data
  ☆98Updated 2 months ago