Pod5: a high performance file format for nanopore reads.
☆173Nov 19, 2025Updated 4 months ago
Alternatives and similar repositories for pod5-file-format
Users that are interested in pod5-file-format are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Oxford Nanopore's Basecaller☆806Feb 19, 2026Updated last month
- A bioinformatics tool for working with modified bases☆257Jan 19, 2026Updated 2 months ago
- Methylation/modified base calling separated from basecalling.☆185Sep 17, 2024Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆47Feb 3, 2026Updated last month
- Visualise and analyse nanopore (ONT) raw signals☆129Dec 12, 2025Updated 3 months ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆161Jan 29, 2026Updated last month
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated last year
- A PyTorch Basecaller for Oxford Nanopore Reads☆430Feb 20, 2026Updated last month
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆105Jan 28, 2026Updated last month
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- Sequence correction provided by ONT Research☆502Dec 8, 2025Updated 3 months ago
- ☆244Mar 2, 2026Updated 3 weeks ago
- Research release basecalling models and configurations☆117May 21, 2025Updated 10 months ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 2 years ago
- Plotting scripts for long read sequencing data☆536Mar 17, 2026Updated last week
- slow5lib is a software library for reading & writing SLOW5 files.☆47Feb 24, 2026Updated last month
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- Open Human Genome Library☆63Dec 22, 2025Updated 3 months ago
- Plotting tools for nanopore methylation data☆95Jul 28, 2025Updated 7 months ago
- Correcting errors in noisy long reads using variation graphs☆50Nov 17, 2022Updated 3 years ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Protobuf and gRPC specifications for the MinKNOW API☆68Oct 29, 2025Updated 4 months ago
- Signal-level algorithms for MinION data☆594Aug 5, 2023Updated 2 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Dec 21, 2022Updated 3 years ago
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated 11 months ago
- Minimal but speedy quality control for nanopore reads in Rust☆137Sep 16, 2024Updated last year
- ☆82Jan 6, 2025Updated last year
- ☆16Aug 14, 2024Updated last year
- Read Until client library for Nanopore Sequencing☆108Sep 25, 2024Updated last year
- RNA modifications detection from Nanopore dRNA-Seq data☆88Mar 12, 2026Updated last week
- De novo assembler for single molecule sequencing reads using repeat graphs☆910May 2, 2025Updated 10 months ago
- Oxford Nanopore Technologies fast5 API software☆154Feb 27, 2024Updated 2 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated 8 months ago
- ☆50Mar 6, 2026Updated 2 weeks ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆61Mar 5, 2025Updated last year
- VBZ compression plugin for nanopore signal data☆43Apr 7, 2025Updated 11 months ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆234May 4, 2023Updated 2 years ago
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,144Feb 13, 2026Updated last month