Alternatives and similar repositories for pod5-file-format

Users that are interested in pod5-file-format are comparing it to the libraries listed below

• nanoporetech / remora
  Methylation/modified base calling separated from basecalling.
  ☆182Updated last year
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆243Updated last week
• nanoporetech / ont_fast5_api
  Oxford Nanopore Technologies fast5 API software
  ☆153Updated last year
• hasindu2008 / f5c
  Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)
  ☆162Updated 2 weeks ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆161Updated 11 months ago
• LooseLab / readfish
  CLI tool for flexible and fast adaptive sampling on ONT sequencers
  ☆194Updated 8 months ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆166Updated last week
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆168Updated 2 months ago
• marbl / Winnowmap
  Long read / genome alignment software
  ☆310Updated last month
• lbcb-sci / herro
  HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …
  ☆238Updated 3 weeks ago
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆246Updated last month
• wdecoster / chopper
  ☆227Updated last month
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆160Updated 3 months ago
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆209Updated 2 months ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆237Updated last year
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆107Updated last year
• nanoporetech / megalodon
  Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…
  ☆204Updated 2 years ago
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆225Updated 2 weeks ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 8 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆284Updated last year
• lbcb-sci / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆235Updated 2 years ago
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆325Updated 4 months ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆167Updated 2 years ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆143Updated 6 months ago
• marbl / HG002
  A complete diploid human genome
  ☆140Updated 4 months ago
• wdecoster / nanoQC
  Quality control tools for nanopore sequencing data
  ☆111Updated last year
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆118Updated 6 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆131Updated last month
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆217Updated 2 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆164Updated 3 years ago