Pod5: a high performance file format for nanopore reads.
☆175Jul 6, 2026Updated 2 weeks ago
Alternatives and similar repositories for pod5-file-format
Users that are interested in pod5-file-format are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Oxford Nanopore's Basecaller☆854Updated this week
- A bioinformatics tool for working with modified bases☆270Jul 14, 2026Updated last week
- Methylation/modified base calling separated from basecalling.☆188Sep 17, 2024Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆130Jun 11, 2026Updated last month
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Mar 19, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- lossless nanopore pod5 <=> s/blow5 file conversion☆48Apr 30, 2026Updated 2 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆287Oct 18, 2024Updated last year
- A PyTorch Basecaller for Oxford Nanopore Reads☆436Feb 20, 2026Updated 5 months ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆106Jan 28, 2026Updated 5 months ago
- Predictive kmer models for development use☆64Jun 6, 2023Updated 3 years ago
- Sequence correction provided by ONT Research☆518May 20, 2026Updated 2 months ago
- ☆258Jul 1, 2026Updated 3 weeks ago
- Research release basecalling models and configurations☆119May 20, 2026Updated 2 months ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Plotting scripts for long read sequencing data☆557Jun 15, 2026Updated last month
- slow5lib is a software library for reading & writing SLOW5 files.☆48Jun 20, 2026Updated last month
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- Plotting tools for nanopore methylation data☆95Jul 28, 2025Updated 11 months ago
- Correcting errors in noisy long reads using variation graphs☆52Nov 17, 2022Updated 3 years ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆383Jul 9, 2026Updated 2 weeks ago
- Protobuf and gRPC specifications for the MinKNOW API☆72Updated this week
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated last year
- Minimal but speedy quality control for nanopore reads in Rust☆139Sep 16, 2024Updated last year
- ☆85Jan 6, 2025Updated last year
- Read Until client library for Nanopore Sequencing☆108Sep 25, 2024Updated last year
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆62Updated this week
- ☆18Aug 14, 2024Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆945Apr 3, 2026Updated 3 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Jun 20, 2026Updated last month
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆232May 4, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Oxford Nanopore Technologies fast5 API software☆155Feb 27, 2024Updated 2 years ago
- Signal-level algorithms for MinION data☆600Aug 5, 2023Updated 2 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated last year
- VBZ compression plugin for nanopore signal data☆44Apr 7, 2025Updated last year
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,220May 19, 2026Updated 2 months ago
- ☆52Apr 10, 2026Updated 3 months ago