Alternatives and similar repositories for NanoCaller

Users that are interested in NanoCaller are comparing it to the libraries listed below

• HKU-BAL / ClairS
  ClairS - a deep-learning method for long-read somatic small variant calling
  ☆93Updated 3 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆125Updated 2 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 3 years ago
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆87Updated 3 weeks ago
• friend1ws / nanomonsv
  SV detection tool for nanopore sequence reads
  ☆93Updated 6 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆114Updated 4 months ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆121Updated last month
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆113Updated last year
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆135Updated last year
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 5 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆146Updated last week
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆116Updated 2 weeks ago
• twolinin / longphase
  ☆117Updated last month
• epi2me-labs / modbam2bed
  ☆49Updated last week
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆124Updated 3 years ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆100Updated last year
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆109Updated 2 weeks ago
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated 2 years ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆143Updated last year
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆131Updated 2 weeks ago
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆48Updated 2 years ago
• human-pangenomics / hpp_production_workflows
  WDL’s and Dockerfiles for assembly QC process
  ☆69Updated 2 months ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated 5 months ago
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆46Updated 4 years ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆95Updated 2 months ago
• CshlSiepelLab / phast
  PHAST
  ☆75Updated this week
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆152Updated last week
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆78Updated 6 months ago
• arangrhie / T2T-Polish
  Evaluation and polishing workflows for T2T genome assemblies
  ☆137Updated 3 months ago