Variant calling tool for long-read sequencing data
☆117Mar 19, 2025Updated last year
Alternatives and similar repositories for NanoCaller
Users that are interested in NanoCaller are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Long read based human genomic structural variation detection with cuteSV☆286Mar 26, 2026Updated last month
- diploid SNV caller for error-prone reads☆208Apr 26, 2024Updated 2 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆358Updated this week
- Read-based phasing of genomic variants, also called haplotype assembly☆414Dec 31, 2025Updated 4 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆239Dec 29, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆248Apr 1, 2026Updated last month
- Structural variation caller using third generation sequencing☆651Apr 2, 2026Updated 3 weeks ago
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- SV detection tool for nanopore sequence reads☆97Mar 25, 2026Updated last month
- Filtering and trimming of long read sequencing data☆217Jan 16, 2023Updated 3 years ago
- Comparison of multiple long read datasets☆171Dec 2, 2025Updated 4 months ago
- Sequence correction provided by ONT Research☆507Apr 8, 2026Updated 3 weeks ago
- De novo genome assembler for long uncorrected reads☆231Nov 15, 2023Updated 2 years ago
- Structural variant caller for low-depth long-read sequencing data☆48Feb 5, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆104Apr 8, 2026Updated 3 weeks ago
- Long read aligner☆114May 26, 2023Updated 2 years ago
- haplotypic duplication identification tool☆283Oct 30, 2025Updated 6 months ago
- Long read / genome alignment software☆316Dec 16, 2025Updated 4 months ago
- Evaluating genome assemblies☆120Mar 3, 2026Updated last month
- Structural Variant Identification Method using Long Reads☆181Jun 29, 2021Updated 4 years ago
- k-mer based assembly evaluation☆342Jun 28, 2024Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆235Sep 6, 2024Updated last year
- A genomic k-mer counter (and sequence utility) with nice features.☆166Jul 4, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Long read production pipelines☆151Updated this week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated last year
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆182Apr 1, 2026Updated last month
- ☆287Dec 29, 2025Updated 4 months ago
- Graph-based assembly phasing☆94Nov 25, 2025Updated 5 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆109Jun 6, 2021Updated 4 years ago
- Plotting tools for nanopore methylation data☆95Jul 28, 2025Updated 9 months ago
- Structural variant toolkit for VCFs☆406Mar 21, 2026Updated last month
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆83Jan 20, 2026Updated 3 months ago
- quality filtering tool for long reads☆403Sep 17, 2025Updated 7 months ago
- ☆128Apr 18, 2026Updated last week
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆115Oct 25, 2021Updated 4 years ago
- Phased assembly variant caller☆139Dec 4, 2024Updated last year
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year