Alternatives and similar repositories for NanoCaller

Users that are interested in NanoCaller are comparing it to the libraries listed below

• HKU-BAL / ClairS
  ClairS - a deep-learning method for long-read somatic small variant calling
  ☆85Updated 3 weeks ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 2 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆113Updated last month
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated last month
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆105Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 2 months ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆119Updated 6 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆118Updated last month
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆129Updated 2 months ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆79Updated last year
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆134Updated last month
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆93Updated last month
• twolinin / longphase
  ☆112Updated last month
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆48Updated 2 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆90Updated 3 years ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆114Updated 3 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 5 months ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆117Updated this week
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆80Updated 2 weeks ago
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆74Updated 2 months ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆114Updated last week
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆57Updated last year
• human-pangenomics / hpp_production_workflows
  WDL’s and Dockerfiles for assembly QC process
  ☆67Updated last month
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆118Updated 2 years ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 5 years ago
• human-pangenomics / HG002_Data_Freeze_v1.0
  Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)
  ☆80Updated 3 years ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆85Updated 4 months ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆112Updated 6 months ago