WGLab / NanoCallerLinks
Variant calling tool for long-read sequencing data
☆113Updated 7 months ago
Alternatives and similar repositories for NanoCaller
Users that are interested in NanoCaller are comparing it to the libraries listed below
Sorting:
- SV detection tool for nanopore sequence reads☆95Updated 7 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆114Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆127Updated last week
- Research release basecalling models and configurations☆115Updated 5 months ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆95Updated 4 months ago
- Toolkit for calling structural variants using short or long reads☆111Updated last month
- ☆50Updated last month
- Visualise and analyse nanopore (ONT) raw signals☆124Updated 2 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆87Updated 2 months ago
- A tool for somatic structural variant calling using long reads☆150Updated 3 weeks ago
- Fast and accurate coordinate conversion between assemblies☆117Updated last month
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- accurate LiftOver tool for new genome assemblies☆137Updated last year
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- ☆46Updated last month
- a tool for inferring species tree from sequencing reads☆153Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated last month
- ☆119Updated 2 weeks ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Python programs for processing GFF3 files☆101Updated last year
- Structural Variant Identification Method using Genome Assemblies☆127Updated 3 years ago
- Long read aligner☆115Updated 2 years ago
- Yet another k-mer analyzer☆151Updated last month
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆80Updated 7 months ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆164Updated last week
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated 2 months ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆113Updated 7 months ago
- ☆79Updated 10 months ago