katerinakazantseva / strainy
Graph-based assembly phasing
☆71Updated 2 months ago
Alternatives and similar repositories for strainy:
Users that are interested in strainy are comparing it to the libraries listed below
- Detecting multi-genome synteny using minimizer graph mapping☆76Updated 2 weeks ago
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆52Updated 3 weeks ago
- ☆28Updated last month
- whole genome MLST analysis☆40Updated 8 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated 9 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆39Updated 2 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Split k-mer analysis – version 2☆73Updated this week
- Strain-level haplotyping for metagenomes with short or long-reads.☆49Updated 6 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆52Updated last month
- ✏️ Genome assembly polishing & SNV detection☆64Updated last month
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- Assessing and Improving the quality of metagenomic assemblies☆28Updated 2 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆44Updated last week
- Scalable creating/updating of metagenome profiling databases☆59Updated 2 years ago
- Recombination-free trees☆56Updated last year
- ☆30Updated last month
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 3 months ago
- Correct and scaffold assemblies using long reads☆48Updated last year
- Split Kmer Analysis☆63Updated 2 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆55Updated last week
- post processing of bacterial pangenome gene presence/absence matrices☆54Updated 5 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Microbiome classification pipeline☆64Updated 9 months ago
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- Strain Resolution ON Graphs☆47Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 3 years ago