Graph-based assembly phasing
☆96Nov 25, 2025Updated 6 months ago
Alternatives and similar repositories for strainy
Users that are interested in strainy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆220May 9, 2026Updated last month
- Correcting errors in noisy long reads using variation graphs☆52Nov 17, 2022Updated 3 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Updated this week
- A new high-resolution long-read metagenome assembler for even noisy reads☆154Jun 11, 2026Updated last week
- Reorients assembled microbial sequences☆138Jun 5, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Plasmid analysis using rearrangement distances☆55May 28, 2026Updated 3 weeks ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Jun 4, 2026Updated 2 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆67Apr 10, 2025Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 5 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 4 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆134Jan 22, 2025Updated last year
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆151Jun 1, 2026Updated 2 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆253May 13, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆90May 11, 2026Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆231Apr 27, 2026Updated last month
- Assessing the quality of metagenome-derived genome bins using machine learning☆267Mar 20, 2025Updated last year
- A hybrid assembly and MAG recovery pipeline (and more!)☆107Jun 5, 2026Updated last week
- Basecalling configuration prediction through FASTQ files☆33Mar 17, 2026Updated 3 months ago
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆37Apr 23, 2025Updated last year
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 8 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆255Jun 5, 2026Updated last week
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆46Aug 20, 2025Updated 9 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆311Feb 3, 2026Updated 4 months ago
- Genome size estimation from long read overlaps☆91May 1, 2026Updated last month
- Pan-genome inference and genotyping with long noisy or short accurate reads☆118Dec 13, 2024Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- A comprehensive prokaryotic genome annotation pipeline☆87Jun 3, 2026Updated 2 weeks ago
- Bioinformatics program inStrain☆188Mar 12, 2026Updated 3 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆56Oct 24, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆44Sep 29, 2025Updated 8 months ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated last month
- Ultra-fast preprocessing and quality control for long-read sequencing data☆231Sep 6, 2025Updated 9 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 7 months ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 9 months ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 8 months ago