lbcb-sci / herro
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).
☆211Updated this week
Alternatives and similar repositories for herro:
Users that are interested in herro are comparing it to the libraries listed below
- ☆185Updated last month
- A genome completeness evaluation tool based on miniprot☆204Updated last month
- Any Way to Show Multi genomic Synteny☆181Updated this week
- haplotypic duplication identification tool☆236Updated last year
- Fast and accurately polish the genome generated by long reads.☆222Updated 3 months ago
- a long read simulator that can imitate many types of read problems☆212Updated 9 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆179Updated last month
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆180Updated last month
- Long read / genome alignment software☆284Updated 5 months ago
- A bioinformatics tool for working with modified bases☆185Updated last week
- A gap-closing software tool that uses long reads to enhance genome assembly.☆204Updated 7 months ago
- Nanopore data assembler☆150Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆319Updated 10 months ago
- ☆204Updated 3 months ago
- Jasmine: SV Merging Across Samples☆210Updated 4 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆186Updated this week
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆276Updated last week
- pbsv - PacBio structural variant (SV) calling and analysis tools☆144Updated 2 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆134Updated 3 weeks ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆145Updated last week
- k-mer based assembly evaluation☆309Updated 9 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆330Updated 2 weeks ago
- Constructing a pangenome gene graph☆186Updated 3 weeks ago
- quality filtering tool for long reads☆327Updated last year
- a short-read polishing tool for long-read assemblies☆157Updated 10 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆160Updated last year
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆146Updated 3 weeks ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 6 months ago
- ☆143Updated last week