lbcb-sci / herroLinks
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).
☆227Updated this week
Alternatives and similar repositories for herro
Users that are interested in herro are comparing it to the libraries listed below
Sorting:
- ☆210Updated last month
- haplotypic duplication identification tool☆257Updated last year
- A genome completeness evaluation tool based on miniprot☆219Updated this week
- Fast and accurately polish the genome generated by long reads.☆234Updated 8 months ago
- A bioinformatics tool for working with modified bases☆212Updated last week
- k-mer based assembly evaluation☆326Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆218Updated last year
- Nanopore data assembler☆161Updated 3 years ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆181Updated 2 weeks ago
- Any Way to Show Multi genomic Synteny☆201Updated 2 months ago
- a long read simulator that can imitate many types of read problems☆243Updated last year
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆159Updated 2 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆198Updated 3 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 11 months ago
- ☆216Updated 7 months ago
- Long read / genome alignment software☆297Updated 10 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆160Updated 3 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆185Updated 4 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆177Updated 4 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆302Updated last month
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆226Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆149Updated last month
- Filtering and trimming of long read sequencing data☆209Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆206Updated 2 years ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆180Updated this week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆171Updated this week
- Jasmine: SV Merging Across Samples☆225Updated 9 months ago
- Pairwise whole genome aligner☆186Updated this week
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆237Updated last year