Alternatives and similar repositories for herro:

Users that are interested in herro are comparing it to the libraries listed below

• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆217Updated last month
• wdecoster / chopper
  ☆177Updated 2 weeks ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆174Updated this week
• marbl / Winnowmap
  Long read / genome alignment software
  ☆276Updated 3 months ago
• rrwick / Badread
  a long read simulator that can imitate many types of read problems
  ☆203Updated 7 months ago
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆162Updated last week
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆223Updated last year
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆174Updated 4 months ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆201Updated 2 years ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆174Updated last month
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆276Updated 4 months ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆322Updated last year
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆182Updated 7 months ago
• Gabaldonlab / redundans
  Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
  ☆140Updated last year
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆183Updated 2 weeks ago
• marbl / merqury
  k-mer based assembly evaluation
  ☆302Updated 8 months ago
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆194Updated 5 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆143Updated 2 years ago
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆195Updated last month
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆315Updated 9 months ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆138Updated last month
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆233Updated last year
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆141Updated last year
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆190Updated 5 months ago
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆262Updated this week
• pjedge / longshot
  diploid SNV caller for error-prone reads
  ☆197Updated 10 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆157Updated last year
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆320Updated last week
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆182Updated this week
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆196Updated last year