Alternatives and similar repositories for herro

Users that are interested in herro are comparing it to the libraries listed below

• wdecoster / chopper
  ☆205Updated this week
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆216Updated 3 months ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆207Updated last week
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆229Updated 7 months ago
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆292Updated last week
• marbl / merqury
  k-mer based assembly evaluation
  ☆321Updated last year
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆215Updated 11 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆158Updated 3 years ago
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆249Updated last year
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆172Updated last year
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆283Updated 9 months ago
• jtlovell / GENESPACE
  ☆213Updated 6 months ago
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆201Updated last month
• ncbi / egapx
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆147Updated 3 weeks ago
• lbcb-sci / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆225Updated last year
• rrwick / Badread
  a long read simulator that can imitate many types of read problems
  ☆241Updated last year
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆167Updated last month
• nanoporetech / remora
  Methylation/modified base calling separated from basecalling.
  ☆179Updated 10 months ago
• baoxingsong / AnchorWave
  Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
  ☆175Updated 3 months ago
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆234Updated 11 months ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆208Updated 2 years ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆185Updated 2 months ago
• TobyBaril / EarlGrey
  Earl Grey: A fully automated TE curation and annotation pipeline
  ☆177Updated 2 weeks ago
• Gaius-Augustus / GALBA
  GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…
  ☆145Updated 6 months ago
• marbl / Winnowmap
  Long read / genome alignment software
  ☆294Updated 9 months ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆318Updated 4 months ago
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆354Updated last month
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆194Updated last month
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆208Updated last year
• Gabaldonlab / redundans
  Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
  ☆154Updated 3 months ago