Basecalling configuration prediction through FASTQ files
☆34Mar 17, 2026Updated 5 months ago
Alternatives and similar repositories for LongBow
Users that are interested in LongBow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20Jan 13, 2026Updated 7 months ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 11 months ago
- ☆37Updated this week
- De novo genome assembly for long reads using an overlap graph☆24Jul 3, 2026Updated last month
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- Remove human reads from a sequencing run☆52Jun 29, 2026Updated 2 months ago
- A SIMD-accelerated library to compute random minimizers☆46Aug 26, 2026Updated last week
- Chimera: A Versatile Metagenomic Classification Tool☆21Aug 16, 2026Updated 2 weeks ago
- Graph-based assembly phasing☆102Nov 25, 2025Updated 9 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- GpC methylation from fast5:s to reference anchored calls☆10Nov 18, 2020Updated 5 years ago
- Genome browser 🧬👀🚀☆34Aug 24, 2026Updated last week
- Fast DNA search and [host] depletion using minimizers☆126Aug 26, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last month
- sunburst plots for taxonomy - working to update Krona☆46Sep 22, 2025Updated 11 months ago
- Precise host read removal☆129Apr 13, 2026Updated 4 months ago
- Rapid & standardized genome annotation using protein structural information☆75Jul 2, 2026Updated 2 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated last month
- A new high-resolution long-read metagenome assembler for even noisy reads☆167Jul 3, 2026Updated 2 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 8 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆96Aug 21, 2026Updated last week
- A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.☆32Aug 19, 2026Updated 2 weeks ago
- Genome size estimation from long read overlaps☆92Updated this week
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 2 months ago
- Visualization tool for (meta)genome assembly graphs☆50Updated this week
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆46Jul 1, 2026Updated 2 months ago
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆15Jun 17, 2026Updated 2 months ago
- An extensible and performant aligner and read mapper☆103Jul 27, 2026Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆317Feb 3, 2026Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A tool for generating consensus long-read assemblies for bacterial genomes☆238Updated this week
- Ultra-rapid detection of viral variants directly from sequencing data☆47Updated this week
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆24Aug 22, 2025Updated last year
- A Python package to update the MLST database for the mlst tool.☆32Jul 22, 2026Updated last month
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 7 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Aug 26, 2026Updated last week
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year