JMencius / LongBowLinks
Basecalling configuration prediction through FASTQ files
☆32Updated 2 weeks ago
Alternatives and similar repositories for LongBow
Users that are interested in LongBow are comparing it to the libraries listed below
Sorting:
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆31Updated 2 months ago
- Visualize microbial evolution at the SNP level!☆15Updated 3 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆33Updated 3 weeks ago
- Variant call verification☆16Updated 6 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated last week
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Updated 3 weeks ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated last week
- A novel method for sequence similarity estimation☆28Updated last year
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated 2 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆16Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆59Updated 8 months ago
- Fast viral consensus genome reconstruction☆25Updated 5 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 6 months ago
- Read contamination removal☆25Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 10 months ago
- Sketch phylogenetic trees and networks☆23Updated last week
- ☆12Updated 6 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆44Updated 3 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 9 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆19Updated this week
- Genome size estimation from long read overlaps☆74Updated last week
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Updated last year