Basecalling configuration prediction through FASTQ files
☆33Mar 17, 2026Updated 3 weeks ago
Alternatives and similar repositories for LongBow
Users that are interested in LongBow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 7 months ago
- A SIMD-accelerated library to compute random minimizers☆39Apr 6, 2026Updated last week
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 25, 2026Updated 2 weeks ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jan 27, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Graph-based assembly phasing☆93Nov 25, 2025Updated 4 months ago
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 2 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Aug 26, 2024Updated last year
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆26Jan 25, 2025Updated last year
- Genome size estimation from long read overlaps☆82Updated this week
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 4 months ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 8 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆38Apr 6, 2026Updated last week
- ☆30Updated this week
- Correcting errors in noisy long reads using variation graphs☆51Nov 17, 2022Updated 3 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆65Apr 10, 2025Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆301Feb 3, 2026Updated 2 months ago
- A quality control tool for FASTQ files written in rust☆54Jun 14, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 2 months ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated 10 months ago
- ☆15Feb 10, 2025Updated last year
- ☆10Jun 9, 2025Updated 10 months ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Hardware Accelerated Read Until☆17Sep 30, 2025Updated 6 months ago
- Pangenome Mutation-Annotated Networks☆40Updated this week
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆88Apr 2, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 3 years ago
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆31Jan 22, 2026Updated 2 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 6 months ago
- Remove human reads from a sequencing run☆48Apr 6, 2026Updated last week
- GPU CRF-CTC decoding for nanopore basecalling☆14Apr 2, 2026Updated last week
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated 11 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆87Mar 12, 2026Updated last month