JMencius / LongBowLinks
Basecalling configuration prediction through FASTQ files
☆32Updated last month
Alternatives and similar repositories for LongBow
Users that are interested in LongBow are comparing it to the libraries listed below
Sorting:
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆39Updated 3 months ago
- software to identify primers that can distinguish genomes☆20Updated 3 weeks ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Variant call verification☆16Updated 8 months ago
- A novel method for sequence similarity estimation☆28Updated last year
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Updated 2 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆28Updated 5 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Updated last year
- Genome size estimation from long read overlaps☆80Updated last month
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 2 weeks ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Updated 2 months ago
- Colinear block visualisation tool☆31Updated 2 years ago
- Read contamination removal☆25Updated last year
- Visualize microbial evolution at the SNP level!☆15Updated 5 months ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 11 months ago
- Remove human reads from a sequencing run☆47Updated last month
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆36Updated last week
- ☆14Updated 4 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 8 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated 2 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆19Updated last month
- sunburst plots for taxonomy - working to update Krona☆43Updated 3 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago