JMencius / LongBowLinks
Basecalling configuration prediction through FASTQ files
☆31Updated 5 months ago
Alternatives and similar repositories for LongBow
Users that are interested in LongBow are comparing it to the libraries listed below
Sorting:
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆31Updated last month
- Visualize microbial evolution at the SNP level!☆15Updated 2 months ago
- Genome size estimation from long read overlaps☆62Updated last month
- software to identify primers that can distinguish genomes☆20Updated 9 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆32Updated 2 weeks ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆17Updated 2 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 2 months ago
- Variant call verification☆16Updated 5 months ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated last week
- Rapid discovery of reciprocal best blast pairs.☆10Updated 11 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Better Alignments with Translated HMMER☆23Updated 2 weeks ago
- A novel method for sequence similarity estimation☆28Updated last year
- Extracts subgraphs or components from a graph in GFA format☆25Updated 11 months ago
- Differential k-mer analysis☆37Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Updated 5 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last month
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆25Updated last year
- Read contamination removal☆25Updated last year
- ☆10Updated 4 months ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆18Updated last year
- Pangenome Mutation-Annotated Networks☆15Updated last week
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 9 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 6 years ago
- Sketch phylogenetic trees and networks☆23Updated 2 months ago