Alternatives and similar repositories for EpiNano

Users that are interested in EpiNano are comparing it to the libraries listed below

• epi2me-labs / wf-transcriptomes
  ☆109Updated last month
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆143Updated 5 months ago
• ablab / IsoQuant
  Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
  ☆199Updated this week
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆83Updated 3 years ago
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆148Updated 4 months ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆167Updated 2 years ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆115Updated 4 years ago
• GoekeLab / m6anet
  Detection of m6A from direct RNA-Seq data
  ☆130Updated 8 months ago
• nanoporetech / ont_fast5_api
  Oxford Nanopore Technologies fast5 API software
  ☆154Updated last year
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆236Updated last year
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆166Updated last month
• epi2me-labs / wf-human-variation
  ☆148Updated last month
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆178Updated 2 years ago
• GoekeLab / xpore
  Identification of differential RNA modifications from nanopore direct RNA sequencing
  ☆162Updated last year
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆110Updated last month
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆160Updated 3 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 7 months ago
• bioinfomaticsCSU / deepsignal
  Detecting methylation using signal-level features from Nanopore sequencing reads
  ☆118Updated 2 years ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆160Updated 10 months ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆229Updated 6 months ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆241Updated this week
• PacificBiosciences / DevNet
  The DevNet project on github stores the PacBio DevNet website.
  ☆116Updated 7 years ago
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆200Updated this week
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆116Updated 10 months ago
• PacificBiosciences / ccs
  CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
  ☆126Updated last year
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• BoevaLab / FREEC
  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
  ☆175Updated last year
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆88Updated last week
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆223Updated this week