Rust bindings to minimap2 library
☆113Sep 14, 2026Updated last week
Alternatives and similar repositories for minimap2-rs
Users that are interested in minimap2-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last month
- Tearing through FASTA/Q sequences☆41Jul 9, 2026Updated 2 months ago
- A SIMD-accelerated library to compute random minimizers☆48Aug 26, 2026Updated last month
- Fast FASTX parsing and k-mer methods in Rust☆215Sep 14, 2026Updated last week
- Fast approximate string searching☆169Aug 11, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- An extensible and performant aligner and read mapper☆105Sep 15, 2026Updated last week
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 4 months ago
- k-mers and the like☆23Aug 30, 2026Updated 3 weeks ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆173Sep 9, 2026Updated 2 weeks ago
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 3 years ago
- Simple and transparent support for compressed files.☆81Updated this week
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- Parallel Construction of Suffix Arrays in Rust☆26Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- an API for intersections of genomic data☆149Sep 17, 2026Updated last week
- syncmer graphs, and perhaps other sorts of sequence graphs☆48Aug 28, 2026Updated 3 weeks ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 9 months ago
- Bitpacked sequence trait and implementation☆19Aug 19, 2026Updated last month
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated 2 years ago
- FASTA and FASTQ parsing in Rust☆85Mar 14, 2025Updated last year
- GBZ file format for pangenome graphs☆46Sep 14, 2026Updated last week
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 2 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆32Jul 27, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆48Sep 18, 2026Updated last week
- gia: Genomic Interval Arithmetic☆69Aug 21, 2024Updated 2 years ago
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆374Aug 17, 2026Updated last month
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- De Bruijn graphs in Rust☆72Jul 22, 2024Updated 2 years ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆142Jun 23, 2024Updated 2 years ago
- Fast DNA search and [host] depletion using minimizers☆127Updated this week
- Fast and exact gap-affine partial order alignment☆71Sep 16, 2026Updated last week
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Aug 26, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- A command line utilty for working with BINSEQ files☆41Updated this week
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Compacted and colored de Bruijn graph construction and querying☆101Sep 18, 2026Updated last week
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Bioinformatics I/O libraries in Rust☆725Updated this week