Rust bindings to minimap2 library
☆109Mar 2, 2026Updated this week
Alternatives and similar repositories for minimap2-rs
Users that are interested in minimap2-rs are comparing it to the libraries listed below
Sorting:
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆19Jan 22, 2026Updated last month
- Fast FASTX parsing and k-mer methods in Rust☆210Jan 27, 2026Updated last month
- Iterate over minimizers of a DNA sequence☆31Jul 12, 2024Updated last year
- an API for intersections of genomic data☆143Feb 28, 2026Updated last week
- A pairwise sequence aligner written in Rust☆151Jan 27, 2026Updated last month
- FASTA and FASTQ parsing in Rust☆83Mar 14, 2025Updated 11 months ago
- Fast approximate string searching☆100Updated this week
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated 10 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- k-mers and the like☆22Updated this week
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- Simple and transparent support for compressed files.☆81Feb 27, 2026Updated last week
- A SIMD-accelerated library to compute random minimizers☆39Mar 1, 2026Updated last week
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Dec 3, 2025Updated 3 months ago
- GBZ file format for pangenome graphs☆46Feb 18, 2026Updated 2 weeks ago
- Split k-mer analysis – version 2☆104Jan 29, 2026Updated last month
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆361Jan 29, 2026Updated last month
- Bitpacked sequence trait and implementation☆16Feb 27, 2026Updated last week
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 5 months ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆139Jun 23, 2024Updated last year
- A long read simulator based on badread idea☆22Oct 7, 2022Updated 3 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Compacted and colored de Bruijn graph construction and querying☆94Mar 2, 2026Updated last week
- De Bruijn graphs in Rust☆71Jul 22, 2024Updated last year
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 7 months ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last month
- Bioinformatics I/O libraries in Rust☆655Mar 1, 2026Updated last week
- Whole Genome Alignment Tools☆216Nov 6, 2025Updated 4 months ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 7 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Nov 18, 2023Updated 2 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47Feb 12, 2026Updated 3 weeks ago
- An efficient CLI to extract sequences from the SRA☆121Jan 30, 2026Updated last month
- A minimap2 implementation with binseq inputs☆17Dec 11, 2025Updated 2 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated last year