Alternatives and similar repositories for minimap2-rs

Users that are interested in minimap2-rs are comparing it to the libraries listed below

• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆78Updated 6 months ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated this week
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆84Updated 3 weeks ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• ostnam / rust-wfa
  ☆11Updated 3 years ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated 3 weeks ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆90Updated 3 months ago
• RagnarGrootKoerkamp / sassy
  Fast approximate string searching
  ☆54Updated 3 weeks ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 10 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆64Updated last year
• natir / biotest
  Generate random test data for bioinformatics
  ☆26Updated last year
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆101Updated 3 months ago
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆31Updated last year
• HudsonAlpha / fmlrc2
  ☆47Updated 2 years ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• bede / deacon
  FASTX search and [host] depletion using minimizers
  ☆84Updated 2 weeks ago
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆33Updated this week
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆136Updated 7 months ago
• mbhall88 / ssubmit
  Submit slurm sbatch jobs without a script
  ☆70Updated last month
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated this week
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated 5 months ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated 2 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• TravisWheelerLab / sufr
  Parallel Construction of Suffix Arrays in Rust
  ☆26Updated 4 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆54Updated last week
• wdecoster / kyber
  ☆21Updated 8 months ago
• Rbfinch / grepq
  quickly filter fastq files by matching sequences to a set of regex patterns
  ☆53Updated 2 months ago