Rust bindings to minimap2 library
☆110Mar 30, 2026Updated last month
Alternatives and similar repositories for minimap2-rs
Users that are interested in minimap2-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 3 months ago
- Fast FASTX parsing and k-mer methods in Rust☆211Apr 20, 2026Updated 2 weeks ago
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- an API for intersections of genomic data☆149Mar 12, 2026Updated last month
- Fast approximate string searching☆124Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- k-mers and the like☆22Apr 27, 2026Updated last week
- A pairwise sequence aligner written in Rust☆153Jan 27, 2026Updated 3 months ago
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 3 years ago
- Simple and transparent support for compressed files.☆81Apr 29, 2026Updated last week
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated last year
- FASTA and FASTQ parsing in Rust☆85Mar 14, 2025Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆17Updated this week
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆365Jan 29, 2026Updated 3 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆140Jun 23, 2024Updated last year
- Bitpacked sequence trait and implementation☆18Feb 27, 2026Updated 2 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 7 months ago
- De Bruijn graphs in Rust☆71Jul 22, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Dec 3, 2025Updated 5 months ago
- A SIMD-accelerated library to compute random minimizers☆43Apr 6, 2026Updated last month
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Bioinformatics I/O libraries in Rust☆684May 1, 2026Updated last week
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated last week
- Split k-mer analysis – version 2☆104Apr 9, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Compacted and colored de Bruijn graph construction and querying☆97Mar 6, 2026Updated 2 months ago
- Fast DNA search and [host] depletion using minimizers☆110Apr 14, 2026Updated 3 weeks ago
- An efficient CLI to extract sequences from the SRA☆122Mar 4, 2026Updated 2 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Apr 27, 2026Updated last week
- Wavefront alignment algorithm (WFA) in Golang☆31Jul 26, 2025Updated 9 months ago