Alternatives and similar repositories for minimap2-rs

Users that are interested in minimap2-rs are comparing it to the libraries listed below

• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• RagnarGrootKoerkamp / sassy
  Fast approximate string searching
  ☆86Updated 2 weeks ago
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆85Updated this week
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆80Updated 8 months ago
• ostnam / rust-wfa
  ☆12Updated 3 years ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆93Updated 2 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆33Updated 2 years ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆26Updated last year
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated last year
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆132Updated last week
• wdecoster / kyber
  ☆21Updated 11 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆63Updated last year
• HudsonAlpha / fmlrc2
  ☆49Updated 2 years ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆57Updated 3 weeks ago
• bede / deacon
  Fast DNA search and [host] depletion using minimizers
  ☆95Updated this week
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆38Updated 4 months ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆30Updated 3 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆33Updated 3 weeks ago
• RagnarGrootKoerkamp / simd-sketch
  Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
  ☆20Updated last week
• brentp / vcfexpress
  expressions on VCFs
  ☆87Updated 7 months ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆69Updated 3 weeks ago
• pangenome / impg
  implicit pangenome graph
  ☆84Updated last week
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• mbhall88 / ssubmit
  Submit slurm sbatch jobs without a script
  ☆71Updated 4 months ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆37Updated 5 months ago
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆37Updated last month