haowenz / sigmapLinks
A streaming method for mapping nanopore raw signals
☆32Updated 3 years ago
Alternatives and similar repositories for sigmap
Users that are interested in sigmap are comparing it to the libraries listed below
Sorting:
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last week
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆40Updated last week
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- Tumour-only somatic mutation calling using long reads☆27Updated 9 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆20Updated last year
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A simple tool for extracting reads from Oxford Nanopore fast5 files☆26Updated 7 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆29Updated 2 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆33Updated 2 weeks ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆48Updated last week
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- Linear-time de novo Long Read Assembler☆42Updated 6 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆44Updated 2 weeks ago
- ☆30Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 weeks ago
- Tool for demultiplexing Nanopore barcode sequence data☆22Updated 4 years ago
- ☆67Updated last year
- catalog for long-read sequencing tools☆32Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- ☆48Updated last year