A streaming method for mapping nanopore raw signals
☆32Nov 7, 2021Updated 4 years ago
Alternatives and similar repositories for sigmap
Users that are interested in sigmap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated 6 months ago
- GPU CRF-CTC decoding for nanopore basecalling☆16Sep 2, 2026Updated 2 weeks ago
- A simplified version of Dorado built on top of S/BLOW5 format.☆42Sep 8, 2026Updated last week
- lossless nanopore pod5 <=> s/blow5 file conversion☆50Aug 26, 2026Updated 3 weeks ago
- slow5lib is a software library for reading & writing SLOW5 files.☆49Aug 24, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Predictive kmer models for development use☆64Jun 6, 2023Updated 3 years ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆18Oct 13, 2025Updated 11 months ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆106Aug 26, 2026Updated 3 weeks ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆45Feb 13, 2026Updated 7 months ago
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 11 months ago
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆198Feb 25, 2026Updated 6 months ago
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated last year
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆70Jan 1, 2026Updated 8 months ago
- Visualise and analyse nanopore (ONT) raw signals☆130Jun 11, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- a tool for simulating nanopore raw signal data☆81Mar 4, 2026Updated 6 months ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆19Jul 11, 2022Updated 4 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Aug 21, 2026Updated 3 weeks ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆130Feb 16, 2024Updated 2 years ago
- Nanopore raw signal segmentation and RNA modification estimation.☆13Mar 3, 2026Updated 6 months ago
- Read Until client library for Nanopore Sequencing☆108Sep 25, 2024Updated last year
- ☆23Jan 18, 2026Updated 8 months ago
- k-mer similarity analysis pipeline☆24Sep 1, 2026Updated 2 weeks ago
- A library and tool for accessing remote BLOW5 files.☆25Jun 3, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Sep 12, 2026Updated last week
- Fast and scalable nanopore adaptive sampling☆37Jun 6, 2023Updated 3 years ago
- fork of dorado that supports S/BLOW5☆13May 29, 2026Updated 3 months ago
- Realtime base modification frequency tool☆15Sep 16, 2025Updated last year
- ☆17Updated this week
- ☆15Dec 8, 2022Updated 3 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Dec 27, 2023Updated 2 years ago
- ☆31Jul 28, 2025Updated last year
- Scripts for implementing read until and other examples.☆31Feb 25, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Oxford Nanopore Technologies fast5 API software☆155Feb 27, 2024Updated 2 years ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Long read / genome alignment software☆331Dec 16, 2025Updated 9 months ago
- ☆12Apr 8, 2021Updated 5 years ago
- DeepSelecNet is an enhanced deep learning model to perform read classification for selective sequencing.☆18Mar 5, 2023Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆29Oct 28, 2024Updated last year
- ☆10Mar 11, 2025Updated last year