haowenz / sigmapLinks
A streaming method for mapping nanopore raw signals
☆32Updated 3 years ago
Alternatives and similar repositories for sigmap
Users that are interested in sigmap are comparing it to the libraries listed below
Sorting:
- lossless nanopore pod5 <=> s/blow5 file conversion☆42Updated last month
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 11 months ago
- Pan-Genomic Matching Statistics☆53Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated 2 months ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated last month
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆74Updated 2 weeks ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 7 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆37Updated 3 weeks ago
- A simple tool for extracting reads from Oxford Nanopore fast5 files☆26Updated 8 years ago
- ☆66Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 5 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- A tool for de novo clustering of long transcriptomic reads☆15Updated 3 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- A gene fusion caller for long-read transcriptome sequencing data.☆20Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- ☆30Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- ☆34Updated 5 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago