haowenz / sigmap
A streaming method for mapping nanopore raw signals
☆32Updated 3 years ago
Alternatives and similar repositories for sigmap:
Users that are interested in sigmap are comparing it to the libraries listed below
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated 3 weeks ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Tumour-only somatic mutation calling using long reads☆26Updated 6 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 9 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆41Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated last week
- Set of tools to manipulate and visualize modified base bam files☆54Updated 2 years ago
- ☆27Updated 2 months ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆39Updated last month
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Pan-Genomic Matching Statistics☆52Updated last year
- Tool for demultiplexing Nanopore barcode sequence data☆21Updated 4 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- ☆48Updated 10 months ago
- ☆34Updated 5 years ago
- ☆30Updated last year
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 2 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated 5 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 2 months ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated this week
- A local-haplotagging-based small and structural variant caller☆74Updated last week
- Improved Phased Assembler☆28Updated 3 years ago