haowenz / sigmap
A streaming method for mapping nanopore raw signals
☆31Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for sigmap
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- Pan-Genomic Matching Statistics☆48Updated 7 months ago
- ☆27Updated 10 months ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Tumour-only somatic mutation calling using long reads☆24Updated 3 weeks ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆51Updated this week
- C implementation of the Landau-Vishkin algorithm☆35Updated 2 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated 6 months ago
- ☆28Updated last year
- Lift-over alignments from variant-aware references☆34Updated last year
- Full-length de novo viral haplotype reconstruction from noisy long reads☆17Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated last month
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆51Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- De novo construction of isoforms from long-read data☆17Updated this week
- Python bindings to spoa☆18Updated last year
- A repository for generating strobemers and evalaution☆77Updated 7 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated 7 months ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated 6 months ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated last month
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Find Unique genomic Regions☆29Updated this week
- A tool for de novo clustering of long transcriptomic reads☆14Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- ☆47Updated 4 years ago