hasindu2008 / f5cLinks
Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)
☆158Updated last week
Alternatives and similar repositories for f5c
Users that are interested in f5c are comparing it to the libraries listed below
Sorting:
- Jasmine: SV Merging Across Samples☆228Updated 10 months ago
- Oxford Nanopore Technologies fast5 API software☆154Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆173Updated last year
- Methylation/modified base calling separated from basecalling.☆180Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- A tool for somatic structural variant calling using long reads☆147Updated last week
- A bioinformatics tool for working with modified bases☆220Updated last month
- Research release basecalling models and configurations☆115Updated 5 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆127Updated 3 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆309Updated last month
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆162Updated this week
- Structural Variant Identification Method using Long Reads☆177Updated 4 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆117Updated 3 months ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Updated last year
- Nanopore data assembler☆161Updated 3 years ago
- Visualise and analyse nanopore (ONT) raw signals☆122Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 3 months ago
- ☆216Updated last month
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated last year
- ☆136Updated 3 weeks ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆228Updated last year
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆160Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- A minimap2 frontend for PacBio native data formats☆205Updated last month
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆190Updated 6 months ago
- Pod5: a high performance file format for nanopore reads.☆164Updated 3 weeks ago
- VGP repository for the genome assembly working group☆193Updated 5 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆238Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year