A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
☆21Nov 20, 2022Updated 3 years ago
Alternatives and similar repositories for NanoSNP
Users that are interested in NanoSNP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 6 months ago
- ☆14Oct 17, 2024Updated last year
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆43Apr 16, 2026Updated 2 months ago
- Tumour-only somatic mutation calling using long reads☆28Oct 28, 2024Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆55Mar 5, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆20Nov 17, 2025Updated 6 months ago
- Programs implementing the trio-binning genome assembly method☆21Nov 22, 2023Updated 2 years ago
- ☆39Apr 25, 2023Updated 3 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- Reference bias measuring toolkit☆20Mar 12, 2026Updated 3 months ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆104Apr 8, 2026Updated 2 months ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆33Nov 6, 2022Updated 3 years ago
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 3 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- Repository☆10Oct 23, 2024Updated last year
- ☆17Aug 8, 2025Updated 10 months ago
- Codes and results from ONT dRNA benchmarking☆11Nov 28, 2023Updated 2 years ago
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆11Apr 28, 2026Updated last month
- SV detection tool for nanopore sequence reads☆97Mar 25, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- ☆10Oct 18, 2021Updated 4 years ago
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- ☆36Aug 18, 2024Updated last year
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 6 months ago
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- ☆85Jan 6, 2025Updated last year
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated last month
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- phy-mer☆11Oct 12, 2017Updated 8 years ago
- Large scale ancestry inference from PCA data☆23May 2, 2023Updated 3 years ago
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆112May 1, 2026Updated last month
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- ☆12Apr 16, 2026Updated last month
- Diploid personal genome assembly and comprehensive variant detection based on linked-reads☆21Apr 28, 2023Updated 3 years ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆108May 30, 2026Updated 2 weeks ago