huangnengCSU / NanoSNPLinks
A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
☆21Updated 2 years ago
Alternatives and similar repositories for NanoSNP
Users that are interested in NanoSNP are comparing it to the libraries listed below
Sorting:
- ☆21Updated 6 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- ☆32Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated last week
- ☆19Updated 9 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated last month
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆28Updated last week
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆30Updated 4 months ago
- A tool to detect structural variant☆18Updated 2 years ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Updated 3 years ago
- ☆17Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated 2 months ago
- ULTRA Locates Tandemly Repetitive Areas☆31Updated 3 months ago
- Kmer Analysis of Pileups for Genotyping☆32Updated this week
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- ☆16Updated 7 months ago
- ☆16Updated 2 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago