A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
☆22Nov 20, 2022Updated 3 years ago
Alternatives and similar repositories for NanoSNP
Users that are interested in NanoSNP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 11 months ago
- ☆14Oct 17, 2024Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆29Oct 28, 2024Updated 2 years ago
- ☆20Nov 17, 2025Updated 11 months ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆39Apr 25, 2023Updated 3 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆58Mar 5, 2025Updated last year
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- Programs implementing the trio-binning genome assembly method☆22Nov 22, 2023Updated 2 years ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆19Jul 11, 2022Updated 4 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- Tools to explore Minimum Decycling Sets (MDSs) of the de Bruijn graph☆12Sep 11, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆45Apr 16, 2026Updated 6 months ago
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 7 months ago
- Large scale ancestry inference from PCA data☆26May 2, 2023Updated 3 years ago
- Repository☆10Oct 23, 2024Updated 2 years ago
- Variant calling tool for long-read sequencing data☆119Mar 19, 2025Updated last year
- Reference bias measuring toolkit☆22Mar 12, 2026Updated 7 months ago
- ☆33Nov 6, 2022Updated 3 years ago
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Diploid personal genome assembly and comprehensive variant detection based on linked-reads☆21Apr 28, 2023Updated 3 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆15Apr 29, 2024Updated 2 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- PEPPER-Margin-DeepVariant☆260Jan 12, 2024Updated 2 years ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- ☆10Oct 18, 2021Updated 5 years ago
- SV detection tool for nanopore sequence reads☆99Mar 25, 2026Updated 7 months ago
- A viral haplotype reconstruction tool for long reads.☆18Jun 3, 2026Updated 5 months ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- phy-mer☆11Oct 12, 2017Updated 9 years ago
- ☆85Mar 3, 2025Updated last year
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- ☆13Apr 16, 2026Updated 6 months ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆12Sep 28, 2026Updated last month
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆112Jun 25, 2026Updated 4 months ago
- Workflow for human mitochondria analysis☆10Nov 2, 2024Updated 2 years ago