LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads
☆111Jun 25, 2026Updated 4 months ago
Alternatives and similar repositories for longcallD
Users that are interested in longcallD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆97Aug 2, 2026Updated 3 months ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆47Updated this week
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆39Oct 27, 2025Updated last year
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆40Dec 30, 2025Updated 10 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆24Aug 1, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Kmer Analysis of Pileups for Genotyping☆43Jul 16, 2026Updated 3 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- vcfdist: Accurately benchmarking phased variant calls☆90Aug 28, 2026Updated 2 months ago
- Transformer-based sequence correction method for genome assembly polishing☆111Mar 11, 2025Updated last year
- A tool for sniffing out the differences in vari-Ants☆58Updated this week
- Scoring GT/AG sites for improving spliced alignment☆60Nov 10, 2025Updated 11 months ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated last year
- Evaluating genome assemblies☆129Oct 21, 2026Updated last week
- ☆34Jul 13, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool for somatic structural variant calling using long reads☆181Jun 8, 2026Updated 4 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆91Oct 15, 2026Updated 2 weeks ago
- Genome browser and variant annotation☆400Updated this week
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- Joint structural variant and copy number variant caller for HiFi sequencing data☆85Updated this week
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆88Updated this week
- Phased assembly variant caller☆147Dec 4, 2024Updated last year
- ☆167Apr 13, 2026Updated 6 months ago
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 9 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆134Oct 25, 2026Updated last week
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆104Jan 28, 2026Updated 9 months ago
- genotype and visualize structural variants in the human pangenome graphs☆16Nov 21, 2025Updated 11 months ago
- Simple pileup-based variant caller☆96Apr 25, 2025Updated last year
- A list of software for pangenomics☆202Oct 15, 2026Updated 2 weeks ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆21Oct 20, 2026Updated last week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆132Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆11Jun 15, 2026Updated 4 months ago
- ☆20Nov 17, 2025Updated 11 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated last month
- ☆37Feb 22, 2023Updated 3 years ago
- ☆45Dec 29, 2025Updated 10 months ago
- Tandem repeat genotyping with long reads☆41Sep 23, 2025Updated last year
- Pangenome-based structural variation caller☆44Updated this week