LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads
☆107Jun 25, 2026Updated 3 weeks ago
Alternatives and similar repositories for longcallD
Users that are interested in longcallD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆94Jun 26, 2026Updated 3 weeks ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 6 months ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 10 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆82Jul 17, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Transformer-based sequence correction method for genome assembly polishing☆105Mar 11, 2025Updated last year
- Scoring GT/AG sites for improving spliced alignment☆58Nov 10, 2025Updated 8 months ago
- A tool for somatic structural variant calling using long reads☆174Jun 8, 2026Updated last month
- ☆22Jul 13, 2026Updated last week
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 4 months ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆79Nov 4, 2025Updated 8 months ago
- vcfdist: Accurately benchmarking phased variant calls☆87Updated this week
- Kmer Analysis of Pileups for Genotyping☆40Jul 16, 2026Updated last week
- A tool for sniffing out the differences in vari-Ants☆43Apr 7, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆162Apr 13, 2026Updated 3 months ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆100Jan 28, 2026Updated 5 months ago
- Tandem repeat genotyping with long reads☆38Sep 23, 2025Updated 10 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- Genome browser and variant annotation☆395Jun 25, 2026Updated 3 weeks ago
- Evaluating genome assemblies☆123Mar 3, 2026Updated 4 months ago
- ☆20Nov 17, 2025Updated 8 months ago
- A list of software for pangenomics☆196Updated this week
- This is the standalone version of the EviAnn pipeline☆175Jun 24, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Variant Calling for the HPRC2☆16May 26, 2026Updated last month
- CAncer Standards Long-read Evaluation☆62Jun 26, 2026Updated 3 weeks ago
- ☆129Updated this week
- base-accurate DNA sequence alignments using WFA and mashmap3☆220Jun 21, 2026Updated last month
- Phased assembly variant caller☆142Dec 4, 2024Updated last year
- Identification of transposable element families from pangenome polymorphisms☆57Jun 8, 2026Updated last month
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆87May 27, 2026Updated last month
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆27Jul 15, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Long read based human genomic structural variation detection with cuteSV☆291Jul 12, 2026Updated last week
- ☆32Jun 18, 2026Updated last month
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 6 months ago
- ☆44Dec 29, 2025Updated 6 months ago
- Toolkit for calling structural variants using short or long reads☆115Jul 14, 2026Updated last week
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 8 months ago