BonsonW / slow5curlLinks
A library and tool for accessing remote BLOW5 files.
☆24Updated this week
Alternatives and similar repositories for slow5curl
Users that are interested in slow5curl are comparing it to the libraries listed below
Sorting:
- lossless nanopore pod5 <=> s/blow5 file conversion☆45Updated this week
- ☆46Updated 2 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- Fast sequencing data quality metrics☆31Updated 4 months ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆42Updated last week
- Automated Detection and Qualification of Differential Methylation☆16Updated 2 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- Easy genomic regions for short-read variant calling☆45Updated 4 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 5 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 3 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Updated 10 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 7 months ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 6 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆35Updated 3 months ago
- A tool for simulating random mutations in any genome☆43Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- vembrane filters VCF records using python expressions☆68Updated 3 weeks ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 5 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Updated last month
- Fast FASTQ sample demultiplexing in Rust.☆66Updated 2 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 10 months ago