Alternatives and similar repositories for slow5curl:

Users that are interested in slow5curl are comparing it to the libraries listed below

• Psy-Fer / blue-crab
  crab go snap snap
  ☆37Updated last month
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆33Updated 7 months ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆35Updated 2 weeks ago
• pierrepeterlongo / back_to_sequences
  ☆41Updated 3 weeks ago
• PacificBiosciences / HiFi-SVTopo
  Complex structural variant visualization for HiFi sequencing data
  ☆26Updated last week
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆26Updated 4 months ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆35Updated 8 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆26Updated 3 months ago
• sanger-tol / genomeassembly
  Implementation of ToL genome assembly workflows
  ☆20Updated this week
• Psy-Fer / buttery-eel
  The buttery eel - a slow5 guppy/dorado basecaller wrapper
  ☆39Updated 2 weeks ago
• bioinf-benchmarking / mapping-benchmarking
  Snakemake pipeline for benchmarking read mappers
  ☆16Updated last year
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated 5 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated this week
• WGLab / LongReadSum
  ☆17Updated last month
• marbl / T2T-Browser
  Genome browser hub for the T2T genomes and resources
  ☆17Updated last week
• UCSC-nanopore-cgl / margin
  ☆30Updated 2 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆48Updated 3 weeks ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• mcfrith / dnarrange
  ☆16Updated 2 months ago
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆12Updated last year
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 6 months ago
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆29Updated 5 months ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆48Updated 5 years ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 3 months ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated last month
• alevar / tiebrush
  Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)
  ☆17Updated this week
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆31Updated this week