Detection of m6A from direct RNA-Seq data
☆131May 19, 2025Updated 10 months ago
Alternatives and similar repositories for m6anet
Users that are interested in m6anet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆163Nov 7, 2024Updated last year
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Dec 21, 2022Updated 3 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆14Nov 15, 2021Updated 4 years ago
- ☆10Mar 11, 2025Updated last year
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆44Jul 19, 2024Updated last year
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- ☆24Dec 24, 2022Updated 3 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- ☆82Jan 6, 2025Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆65Oct 11, 2024Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆153Jan 23, 2026Updated 2 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Mar 12, 2026Updated last week
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated 3 weeks ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Jul 8, 2022Updated 3 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 2 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated last year
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆20May 14, 2021Updated 4 years ago
- ☆19Mar 31, 2025Updated 11 months ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆161Jan 29, 2026Updated last month
- Xron - an omni basecaller for ONT reads.☆24Nov 27, 2024Updated last year
- A bioinformatics tool for working with modified bases☆257Jan 19, 2026Updated 2 months ago
- ☆39Apr 25, 2023Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Oct 14, 2024Updated last year
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 2 years ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆105Jan 28, 2026Updated last month
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆230Mar 3, 2026Updated 2 weeks ago
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Sep 1, 2025Updated 6 months ago
- Methylation/modified base calling separated from basecalling.☆185Sep 17, 2024Updated last year
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated 10 months ago
- ☆14Oct 5, 2023Updated 2 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆16Mar 9, 2026Updated 2 weeks ago
- Visualise and analyse nanopore (ONT) raw signals☆129Dec 12, 2025Updated 3 months ago
- (m)6A (I)dentification Using (N)anopor(E) (S)equencing☆19Nov 25, 2020Updated 5 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆47Feb 3, 2026Updated last month
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆73Updated this week
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆39Aug 2, 2024Updated last year
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆256Mar 12, 2026Updated last week