RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440).
☆70Jan 1, 2026Updated 8 months ago
Alternatives and similar repositories for RawHash
Users that are interested in RawHash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated 6 months ago
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated last year
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Predictive kmer models for development use☆64Jun 6, 2023Updated 3 years ago
- Codes and results from ONT dRNA benchmarking☆12Nov 28, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆18Oct 13, 2025Updated 11 months ago
- slow5lib is a software library for reading & writing SLOW5 files.☆49Aug 24, 2026Updated 3 weeks ago
- a tool for simulating nanopore raw signal data☆81Mar 4, 2026Updated 6 months ago
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.☆15Oct 6, 2021Updated 4 years ago
- ☆10Mar 11, 2025Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆130Jun 11, 2026Updated 3 months ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆106Aug 26, 2026Updated 3 weeks ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 3 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆50Aug 26, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A simplified version of Dorado built on top of S/BLOW5 format.☆42Sep 8, 2026Updated last week
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- Pan-Genomic Matching Statistics☆59Apr 3, 2024Updated 2 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- Fast and scalable nanopore adaptive sampling☆37Jun 6, 2023Updated 3 years ago
- µbinfie blog☆19Jul 21, 2025Updated last year
- GPU CRF-CTC decoding for nanopore basecalling☆16Sep 2, 2026Updated 2 weeks ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 8 months ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆47May 10, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Ultrafast identification of signature sequences in microbial genomes☆20Updated this week
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆45Feb 13, 2026Updated 7 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Sep 12, 2026Updated last week
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 11 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆264Updated this week
- DeepSelecNet is an enhanced deep learning model to perform read classification for selective sequencing.☆18Mar 5, 2023Updated 3 years ago
- Pod5: a high performance file format for nanopore reads.☆177Aug 24, 2026Updated 3 weeks ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Methylation/modified base calling separated from basecalling.☆188Sep 17, 2024Updated 2 years ago
- ☆84Jan 6, 2025Updated last year
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28May 23, 2024Updated 2 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Aug 27, 2026Updated 3 weeks ago
- Very fast ONT basecaller☆52Jun 17, 2022Updated 4 years ago
- Source code of the processing-in-memory simulator used in the GRIM-Filter paper published at BMC Genomics in 2018: "GRIM-Filter: Fast See…☆11Feb 5, 2018Updated 8 years ago
- Population analysis PIPEline 🛠🧬☆28Mar 2, 2026Updated 6 months ago