hasindu2008 / sigtk

Related projects: ⓘ

• Psy-Fer / blue-crab
  crab go snap snap
  ☆28Updated 2 weeks ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆23Updated last year
• aljpetri / isONform
  De novo construction of isoforms from long-read data
  ☆15Updated last month
• a-slide / MetaCompore
  Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing
  ☆9Updated 3 years ago
• jts / mbtools
  ☆13Updated last year
• JensUweUlrich / ReadBouncer
  Fast and scalable nanopore adaptive sampling
  ☆33Updated last year
• human-pangenomics / hprc-tutorials
  ☆12Updated 5 months ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 2 years ago
• DNKonanov / Snapper
  snapper
  ☆13Updated 2 months ago
• Gaius-Augustus / Tiberius
  deep learning gene finder
  ☆22Updated last week
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆27Updated 2 years ago
• ben-lerch / BaseMod-3.0
  ☆14Updated this week
• EliseCoopman / methylmap
  Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.
  ☆18Updated last week
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆59Updated 4 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆28Updated 3 years ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆49Updated last year
• huangnengCSU / longcallR
  LongcallR is a small variant caller for single molecule long-read RNA-seq data
  ☆40Updated last week
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated last year
• Kingsford-Group / rnaseqtools
  toolkit to process gtf files
  ☆16Updated 2 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆53Updated 2 weeks ago
• at-cg / RAFT
  ☆17Updated 3 weeks ago
• dvdylus / read2tree
  ☆20Updated 2 years ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆16Updated last month
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆19Updated 6 months ago
• agshumate / LiftoffTools
  ☆24Updated last year
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆26Updated 3 months ago
• mkirsche / Grafter
  Scaffolding with Ultralong Reads
  ☆14Updated 3 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated 2 weeks ago
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆15Updated 4 months ago
• RitchieLabIGH / iMOKA
  interactive Multi Objective K-mer Analysis
  ☆23Updated last year