hasindu2008 / sigtk
A simple toolkit for manipulating nanopore signal data
☆18Updated 3 months ago
Alternatives and similar repositories for sigtk:
Users that are interested in sigtk are comparing it to the libraries listed below
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- Tumour-only somatic mutation calling using long reads☆25Updated 2 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- ☆13Updated last year
- ☆14Updated 9 months ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Updated 2 years ago
- ☆41Updated last month
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated last week
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- crab go snap snap☆35Updated last month
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- interactive Multi Objective K-mer Analysis☆23Updated last year
- A long-read analysis toolbox for cancer and population genomics☆21Updated 10 months ago
- Improved Phased Assembler☆27Updated 2 years ago
- transposable element typing pipeline☆17Updated 10 months ago
- Variant call verification☆15Updated this week
- ☆9Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 2 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing☆9Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆24Updated last month
- A tool for de novo clustering of long transcriptomic reads☆14Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆20Updated 2 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated last month
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago