warp9seq / minimodLinks
A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
☆37Updated last month
Alternatives and similar repositories for minimod
Users that are interested in minimod are comparing it to the libraries listed below
Sorting:
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- ☆45Updated last month
- lossless nanopore pod5 <=> s/blow5 file conversion☆42Updated 3 weeks ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆34Updated 2 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 9 months ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 9 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last month
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆39Updated 11 months ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated last month
- Implementation of ToL genome assembly workflows☆20Updated last week
- ☆27Updated 2 years ago
- A battery of methylation tools for PacBio HiFi reads☆41Updated last week
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆50Updated 6 months ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆61Updated last week
- Linear-time de novo Long Read Assembler☆41Updated 7 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Kmer Analysis of Pileups for Genotyping☆32Updated last week
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆20Updated 6 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 11 months ago
- ☆17Updated last year
- Differential k-mer analysis☆37Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆28Updated 3 weeks ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 2 years ago