Alternatives and similar repositories for nanocompore:

Users that are interested in nanocompore are comparing it to the libraries listed below

• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆96Updated last year
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated last year
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆122Updated 2 months ago
• wdecoster / methplotlib
  Plotting tools for nanopore methylation data
  ☆90Updated 8 months ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆135Updated last month
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆107Updated 8 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆100Updated 4 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆157Updated last year
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆78Updated 10 months ago
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆93Updated 5 months ago
• twolinin / longphase
  ☆108Updated this week
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆85Updated 6 months ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆101Updated 2 months ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆140Updated last month
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆111Updated 2 months ago
• LooseLab / bulkvis
  ☆46Updated 3 months ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆141Updated last week
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• epi2me-labs / wf-basecalling
  ☆35Updated 3 weeks ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆96Updated 10 months ago
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆109Updated 2 years ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆104Updated 8 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆115Updated this week
• vpc-ccg / haslr
  A fast tool for hybrid genome assembly of long and short reads
  ☆76Updated 4 years ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆128Updated 3 months ago
• epi2me-labs / wf-transcriptomes
  ☆86Updated last month
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆111Updated 3 weeks ago