Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
☆139Sep 8, 2026Updated last month
Alternatives and similar repositories for panacus
Users that are interested in panacus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phased structural variant discovery in pangenomes☆43Sep 18, 2026Updated 3 weeks ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated last month
- implicit pangenome graph☆114Sep 26, 2026Updated last week
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 7 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Pangenome-based genome inference☆181Sep 15, 2026Updated 3 weeks ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆137Sep 21, 2026Updated 2 weeks ago
- ☆102Apr 22, 2024Updated 2 years ago
- Statistics and analysis for variation graphs☆55Dec 17, 2024Updated last year
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- ☆23Sep 22, 2026Updated 2 weeks ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆47Oct 13, 2024Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆37Jun 12, 2025Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆251Sep 16, 2026Updated 3 weeks ago
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 8 months ago
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated last week
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 5 months ago
- Fast and exact gap-affine partial order alignment☆71Sep 16, 2026Updated 3 weeks ago
- A list of software for pangenomics☆198Sep 16, 2026Updated 3 weeks ago
- COsine SImilarity-based Genotyper using pangenomes☆40Sep 24, 2026Updated 2 weeks ago
- strange cross-platform, performance-oriented and interactive pangenome and large graph visualization☆55Jul 29, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A genome completeness evaluation tool based on miniprot☆267Aug 17, 2026Updated last month
- AlfaPang builds pangenome graphs without alignments or references.☆17Nov 7, 2025Updated 11 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆117Sep 28, 2026Updated last week
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 11 months ago
- ☆21Feb 15, 2025Updated last year
- the pangenome graph builder☆519Jul 24, 2026Updated 2 months ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 6 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆67Aug 21, 2026Updated last month
- Genotyping of copy number sensitive allele-specific haplotypes☆29Aug 28, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- ☆32Updated this week
- ☆199Updated this week
- Targeted genotyper for complex polymorphic genes☆50Oct 2, 2026Updated last week
- ☆23Apr 15, 2024Updated 2 years ago
- General purpose utility related to GAF files☆38Aug 6, 2026Updated 2 months ago
- Efficient low-divergence mapping of long reads in minimizer space☆70Oct 7, 2023Updated 3 years ago