codialab / panacusLinks
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
☆116Updated 2 weeks ago
Alternatives and similar repositories for panacus
Users that are interested in panacus are comparing it to the libraries listed below
Sorting:
- Pipeline to convert a haploid assembly into diploid☆108Updated 11 months ago
- A list of software for pangenomics☆164Updated 2 weeks ago
- ☆144Updated last month
- ☆68Updated last week
- ☆119Updated 2 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆93Updated last month
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- A program for assessing the T2T genome continuity☆91Updated 2 weeks ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆126Updated 2 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆129Updated 3 years ago
- Pangenome-based genome inference☆152Updated 3 weeks ago
- A organelle de novo genome assembly toolkit☆71Updated 10 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆116Updated last month
- Simple pileup-based variant caller☆95Updated 8 months ago
- ☆121Updated last month
- Call select base modifications in PacBio HiFi reads☆15Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆120Updated 6 months ago
- Make colorful identity heatmaps of genomic sequence☆128Updated last year
- TSEBRA: Transcript Selector for BRAKER☆49Updated last month
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆107Updated 3 weeks ago
- SRF: Satellite Repeat Finder☆101Updated last year
- Interactive quality assessment of genome assemblies☆116Updated last week
- De novo assembly from Oxford Nanopore reads.☆88Updated last month
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆75Updated 3 weeks ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆99Updated last year
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- Evaluating genome assemblies☆109Updated 3 months ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆87Updated last year