codialab / panacusLinks
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
☆118Updated this week
Alternatives and similar repositories for panacus
Users that are interested in panacus are comparing it to the libraries listed below
Sorting:
- Pipeline to convert a haploid assembly into diploid☆109Updated 11 months ago
- ☆145Updated 2 months ago
- Evaluating genome assemblies☆111Updated last week
- A program for assessing the T2T genome continuity☆92Updated last month
- A list of software for pangenomics☆165Updated last week
- Mumemto: multi-MUM and MEM finding across pangenomes☆127Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 4 months ago
- Structural Variant Identification Method using Genome Assemblies☆132Updated 3 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆99Updated last week
- ☆119Updated 3 months ago
- A organelle de novo genome assembly toolkit☆73Updated 10 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆110Updated last week
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆120Updated 7 months ago
- Simple pileup-based variant caller☆95Updated 8 months ago
- Make colorful identity heatmaps of genomic sequence☆128Updated last year
- De novo assembly from Oxford Nanopore reads.☆88Updated 2 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆118Updated last month
- A local-haplotagging-based small and structural variant caller☆91Updated last month
- ☆121Updated 2 months ago
- Show pangenome graphs in an easy way☆57Updated 5 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆102Updated last year
- Call select base modifications in PacBio HiFi reads☆15Updated 2 months ago
- ☆68Updated last week
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Yet another k-mer analyzer☆156Updated 2 weeks ago
- Pangenome-based genome inference☆153Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 3 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- SRF: Satellite Repeat Finder☆101Updated 2 years ago