codialab / panacusLinks
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
☆111Updated last week
Alternatives and similar repositories for panacus
Users that are interested in panacus are comparing it to the libraries listed below
Sorting:
- Pipeline to convert a haploid assembly into diploid☆102Updated 7 months ago
- Structural Variant Identification Method using Genome Assemblies☆122Updated 2 years ago
- A list of software for pangenomics☆125Updated last week
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Evaluating genome assemblies☆105Updated last month
- A organelle de novo genome assembly toolkit☆67Updated 6 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆103Updated 11 months ago
- ☆137Updated 3 months ago
- A program for assessing the T2T genome continuity☆83Updated last month
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆90Updated last year
- ☆116Updated last week
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆112Updated 2 months ago
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- Simple pileup-based variant caller☆92Updated 4 months ago
- Make colorful identity heatmaps of genomic sequence☆120Updated last year
- Pangenome-based genome inference☆139Updated 3 weeks ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 9 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆80Updated 2 weeks ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆85Updated 9 months ago
- ☆116Updated last week
- Call select base modifications in PacBio HiFi reads☆13Updated 6 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆76Updated last week
- ☆64Updated last month
- Mumemto: multi-MUM and MEM finding across pangenomes☆108Updated last month
- SRF: Satellite Repeat Finder☆97Updated last year
- Interactive quality assessment of genome assemblies☆105Updated 3 months ago
- A program to call variants from genome alignment☆81Updated 3 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆108Updated last month
- Phased assembly variant caller☆125Updated 8 months ago
- Yet another k-mer analyzer☆144Updated last year