A genome completeness evaluation tool based on miniprot
☆245Sep 18, 2025Updated 8 months ago
Alternatives and similar repositories for compleasm
Users that are interested in compleasm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated last month
- Align proteins to genomes with splicing and frameshift☆404Jan 5, 2026Updated 5 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆295May 28, 2026Updated 2 weeks ago
- k-mer based assembly evaluation☆343May 21, 2026Updated 3 weeks ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆123Apr 28, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools for fast and flexible genome assembly scaffolding and improvement☆566Feb 14, 2024Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Mar 20, 2026Updated 2 months ago
- Synteny and Rearrangement Identifier☆471May 20, 2026Updated 3 weeks ago
- High-precision TE Annotator☆160Dec 4, 2025Updated 6 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆124May 4, 2026Updated last month
- A gap-closing software tool that uses long reads to enhance genome assembly.☆240Sep 6, 2024Updated last year
- Constructing a pangenome gene graph☆207Aug 11, 2025Updated 10 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆397Apr 22, 2026Updated last month
- Identify and find telomeres, or telomeric repeats in a genome.☆165Nov 24, 2025Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆207Nov 23, 2025Updated 6 months ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆271Jan 5, 2026Updated 5 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆461Apr 12, 2026Updated 2 months ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 3 months ago
- Yet another k-mer analyzer☆173Dec 30, 2025Updated 5 months ago
- An accurate GFF3/GTF lift over pipeline☆542Aug 1, 2023Updated 2 years ago
- PECAT, a phased error correct and assembly tool☆65Dec 8, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆36Apr 20, 2026Updated last month
- the pangenome graph builder☆501Mar 31, 2026Updated 2 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆133Updated this week
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆210Nov 18, 2022Updated 3 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆107Jun 5, 2026Updated last week
- ☆191Feb 10, 2026Updated 4 months ago
- haplotypic duplication identification tool☆288Oct 30, 2025Updated 7 months ago
- a tool for inferring species tree from sequencing reads☆161May 19, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆88Dec 3, 2025Updated 6 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆254Jun 5, 2026Updated last week
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆193Oct 15, 2025Updated 7 months ago
- Extensive de-novo TE Annotator☆448May 12, 2026Updated last month
- Evaluating genome assemblies☆123Mar 3, 2026Updated 3 months ago
- This is the standalone version of the EviAnn pipeline☆151May 14, 2026Updated 3 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year