huangnengCSU / compleasmLinks
A genome completeness evaluation tool based on miniprot
☆230Updated 3 months ago
Alternatives and similar repositories for compleasm
Users that are interested in compleasm are comparing it to the libraries listed below
Sorting:
- A gap-closing software tool that uses long reads to enhance genome assembly.☆227Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 8 months ago
- Nanopore data assembler☆163Updated 3 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆159Updated 2 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆147Updated 11 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆183Updated 2 months ago
- Version 5 of the CAFE phylogenetics software☆158Updated 11 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆188Updated last month
- High-precision TE Annotator☆145Updated last month
- Identify and find telomeres, or telomeric repeats in a genome.☆154Updated last month
- Yet another k-mer analyzer☆156Updated last week
- ☆225Updated last month
- Fast and accurately polish the genome generated by long reads.☆239Updated last year
- ☆176Updated 2 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆142Updated 6 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆152Updated 6 months ago
- oxford dot plots☆161Updated last month
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆236Updated last week
- haplotypic duplication identification tool☆273Updated 2 months ago
- Comparison of multiple long read datasets☆151Updated last month
- Earl Grey: A fully automated TE curation and annotation pipeline☆189Updated this week
- ☆229Updated 11 months ago
- Constructing a pangenome gene graph☆203Updated 5 months ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆169Updated 8 months ago
- Any Way to Show Multi genomic Synteny☆215Updated 6 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆222Updated last week
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆110Updated 4 months ago
- Structural Variant Identification Method using Genome Assemblies☆130Updated 3 years ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆163Updated last week