huangnengCSU / compleasmLinks
A genome completeness evaluation tool based on miniprot
☆225Updated last month
Alternatives and similar repositories for compleasm
Users that are interested in compleasm are comparing it to the libraries listed below
Sorting:
- A gap-closing software tool that uses long reads to enhance genome assembly.☆219Updated last year
- haplotypic duplication identification tool☆260Updated last year
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆177Updated 2 weeks ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 5 months ago
- ☆216Updated last month
- Nanopore data assembler☆161Updated 3 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆152Updated 3 months ago
- Fast and accurately polish the genome generated by long reads.☆234Updated 9 months ago
- Version 5 of the CAFE phylogenetics software☆148Updated 8 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆178Updated last month
- Identify and find telomeres, or telomeric repeats in a genome.☆146Updated 3 months ago
- High-precision TE Annotator☆136Updated this week
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆147Updated 9 months ago
- ☆168Updated 2 weeks ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆160Updated 6 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆139Updated 3 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆206Updated 3 weeks ago
- Yet another Hi-C scaffolding tool☆163Updated 11 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆231Updated 2 weeks ago
- ☆218Updated 9 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆173Updated last year
- A genomic k-mer counter (and sequence utility) with nice features.☆147Updated 3 months ago
- Any Way to Show Multi genomic Synteny☆209Updated 3 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Earl Grey: A fully automated TE curation and annotation pipeline☆183Updated last month
- Constructing a pangenome gene graph☆196Updated 2 months ago
- a short-read polishing tool for long-read assemblies☆194Updated last month
- Structural Variant Identification Method using Genome Assemblies☆124Updated 3 years ago
- oxford dot plots☆158Updated 3 weeks ago