fawaz-dabbaghieh / PanPALinks
PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.
☆17Updated 9 months ago
Alternatives and similar repositories for PanPA
Users that are interested in PanPA are comparing it to the libraries listed below
Sorting:
- ☆22Updated 2 months ago
- General purpose utility related to GAF files☆29Updated last week
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Extracts subgraphs or components from a graph in GFA format☆25Updated 11 months ago
- Long-read aligner to pangenome graphs☆27Updated last year
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆31Updated last month
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- ☆40Updated 3 months ago
- Population genetics analysis on VG☆16Updated 4 years ago
- ☆17Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 7 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- JTK -- a regional diploid genome assembler☆25Updated last year
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- Prefix-renaming FASTA records really fast.☆16Updated last year
- recompute GFA link overlaps☆25Updated 3 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- Convert HAL to VG☆22Updated last year
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 6 years ago
- GBWT-based handle graph☆31Updated last week
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 11 months ago
- ☆32Updated 2 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- ☆19Updated 11 months ago
- ☆12Updated 5 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 2 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 3 months ago