fawaz-dabbaghieh / PanPALinks
PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.
☆13Updated 5 months ago
Alternatives and similar repositories for PanPA
Users that are interested in PanPA are comparing it to the libraries listed below
Sorting:
- General purpose utility related to GAF files☆28Updated 2 weeks ago
- ☆41Updated 2 months ago
- ☆28Updated 9 months ago
- Targeted genotyper for complex polymorphic genes☆20Updated 2 weeks ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Convert HAL to VG☆22Updated 11 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆16Updated 2 years ago
- Pangenome Graph Variation Format (PGVF)☆20Updated 4 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 10 months ago
- Differential k-mer analysis☆36Updated last year
- ☆26Updated 3 years ago
- Better Alignments with Translated HMMER☆21Updated last week
- Extracts subgraphs or components from a graph in GFA format☆23Updated 8 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 weeks ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- Long-read aligner to pangenome graphs☆26Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated last month
- A K-mer classifier for HiFi reads☆9Updated last year
- ☆21Updated 3 weeks ago
- Construct a Physical Map from Linked Reads☆18Updated last year
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- ☆32Updated 2 years ago
- Linear-time de novo Long Read Assembler☆42Updated 5 months ago
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 3 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 9 months ago
- Genome Assembly 102☆14Updated 2 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago