Alternatives and similar repositories for pangene

Users that are interested in pangene are comparing it to the libraries listed below

• eblerjana / pangenie
  Pangenome-based genome inference
  ☆139Updated 3 weeks ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆100Updated last week
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆142Updated 6 months ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆116Updated 9 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 3 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆172Updated last year
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆134Updated last year
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆90Updated last month
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆109Updated last year
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆157Updated 5 months ago
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆183Updated 3 weeks ago
• daewoooo / SVbyEye
  ☆137Updated 3 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆123Updated last month
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆125Updated 2 weeks ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆125Updated 8 months ago
• marbl / ModDotPlot
  ☆155Updated last week
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆122Updated 2 years ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆153Updated last month
• jtlovell / GENESPACE
  ☆216Updated 7 months ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆150Updated 2 weeks ago
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆174Updated last month
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆223Updated 8 months ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆188Updated last year
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆99Updated 6 months ago
• wdecoster / chopper
  ☆208Updated 3 weeks ago
• alekseyzimin / EviAnn_release
  This is the standalone version of the EviAnn pipeline
  ☆115Updated last week
• lh3 / yak
  Yet another k-mer analyzer
  ☆144Updated last year
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆217Updated 3 months ago
• DerKevinRiehl / TransposonUltimate
  TransposonUltimate - a holistic set of tools for transposon identification
  ☆84Updated 3 years ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆186Updated 3 months ago