lh3 / pangeneLinks
Constructing a pangenome gene graph
☆198Updated 3 months ago
Alternatives and similar repositories for pangene
Users that are interested in pangene are comparing it to the libraries listed below
Sorting:
- Dfam Transposable Element Tools Docker container.☆101Updated 2 weeks ago
- Pangenome-based genome inference☆149Updated this week
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 2 months ago
- Version 5 of the CAFE phylogenetics software☆150Updated 9 months ago
- ☆219Updated 9 months ago
- Collection of tools for the analysis of CpG data☆97Updated 4 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆176Updated last year
- List of genome assembly tools☆83Updated 2 weeks ago
- a tool for inferring species tree from sequencing reads☆153Updated last month
- A list of software for pangenomics☆142Updated 2 weeks ago
- Research release basecalling models and configurations☆116Updated 5 months ago
- source code for EVM☆118Updated 11 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆190Updated 6 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated 4 months ago
- TransposonUltimate - a holistic set of tools for transposon identification☆84Updated 3 years ago
- accurate LiftOver tool for new genome assemblies☆137Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆100Updated 9 months ago
- This is the standalone version of the EviAnn pipeline☆127Updated this week
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆197Updated 5 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆127Updated last week
- Jasmine: SV Merging Across Samples☆230Updated 10 months ago
- Structural Variant Identification Method using Genome Assemblies☆127Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated last month
- A pipeline used to identify different modes of duplicated gene pairs☆110Updated 3 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆209Updated last week
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆147Updated 9 months ago
- Yet another k-mer analyzer☆151Updated last month
- Tools for plotting methylation data in various ways☆164Updated this week
- A tool for somatic structural variant calling using long reads☆150Updated 3 weeks ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago