Alternatives and similar repositories for pangene

Users that are interested in pangene are comparing it to the libraries listed below

• eblerjana / pangenie
  Pangenome-based genome inference
  ☆152Updated 3 weeks ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆165Updated 2 weeks ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆101Updated last week
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆111Updated 3 months ago
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆158Updated 10 months ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆145Updated last year
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆119Updated last year
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆88Updated 3 weeks ago
• jtlovell / GENESPACE
  ☆228Updated 11 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆178Updated 2 years ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆153Updated this week
• daewoooo / SVbyEye
  ☆144Updated last month
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆230Updated 3 months ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆102Updated 5 months ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆156Updated 2 weeks ago
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆211Updated 3 months ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆120Updated 2 years ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆156Updated 5 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆189Updated 7 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆129Updated 3 weeks ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆116Updated 2 weeks ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 7 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated 2 months ago
• twolinin / longphase
  ☆121Updated last month
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆223Updated 3 weeks ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆129Updated 3 years ago
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆168Updated 9 months ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆210Updated last year
• hillerlab / TOGA
  TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…
  ☆202Updated last month
• EichlerLab / pav
  Phased assembly variant caller
  ☆130Updated last year