Constructing a pangenome gene graph
☆213Aug 11, 2025Updated last year
Alternatives and similar repositories for pangene
Users that are interested in pangene are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆140Sep 8, 2026Updated last month
- Pangenome-based genome inference☆184Oct 26, 2026Updated last week
- the pangenome graph builder☆522Jul 24, 2026Updated 3 months ago
- A genome completeness evaluation tool based on miniprot☆270Oct 7, 2026Updated 3 weeks ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 8 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated last month
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆255Dec 16, 2025Updated 10 months ago
- Align proteins to genomes with splicing and frameshift☆425Jan 5, 2026Updated 9 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆37Jun 12, 2025Updated last year
- Phased structural variant discovery in pangenomes☆44Oct 9, 2026Updated 3 weeks ago
- SRF: Satellite Repeat Finder☆111Jan 8, 2024Updated 2 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆140Sep 21, 2026Updated last month
- Official home of genome aligner based upon notion of Cactus graphs☆716Updated this week
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆251Sep 16, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Whole Genome Alignment Tools☆225Nov 6, 2025Updated 11 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆422Updated this week
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Sequence-to-graph mapper and graph generator☆493Aug 11, 2025Updated last year
- ☆102Apr 22, 2024Updated 2 years ago
- Pairwise whole genome aligner☆245Sep 4, 2026Updated last month
- An accurate GFF3/GTF lift over pipeline☆562Aug 1, 2023Updated 3 years ago
- Statistics and analysis for variation graphs☆57Dec 17, 2024Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- alignment to variation graph inducer☆165Jul 29, 2026Updated 3 months ago
- ☆271Jan 24, 2025Updated last year
- Simple pileup-based variant caller☆96Apr 25, 2025Updated last year
- A program for assessing the T2T genome continuity and completeness☆98Oct 13, 2026Updated 2 weeks ago
- A list of software for pangenomics☆202Oct 15, 2026Updated 2 weeks ago
- Synteny and Rearrangement Identifier☆496Jul 1, 2026Updated 4 months ago
- This is the standalone version of the EviAnn pipeline☆188Oct 7, 2026Updated 3 weeks ago
- Detecting multi-genome synteny using minimizer graph mapping☆117Sep 28, 2026Updated last month
- Show pangenome graphs in an easy way☆61Aug 7, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆59Mar 7, 2025Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Assembled Genomes Compressor (AGC) squeezing 290 GB of Human Pangenome Project assemblies down to <1.5 GB (>190× ratio), with sample and …☆188Oct 20, 2026Updated last week
- Tools for fast and flexible genome assembly scaffolding and improvement☆578Oct 1, 2026Updated last month
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 6 months ago
- implicit pangenome graph☆114Updated this week
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago