Alternatives and similar repositories for pangene

Users that are interested in pangene are comparing it to the libraries listed below

• eblerjana / pangenie
  Pangenome-based genome inference
  ☆149Updated 2 months ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆100Updated last month
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆118Updated 11 months ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆111Updated last month
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 5 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆173Updated last year
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆159Updated 7 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆126Updated 3 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆134Updated last week
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆96Updated 3 months ago
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆148Updated 8 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆189Updated 5 months ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆153Updated 3 months ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆149Updated 3 weeks ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆228Updated 10 months ago
• jtlovell / GENESPACE
  ☆218Updated 9 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆225Updated last month
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆196Updated 2 weeks ago
• daewoooo / SVbyEye
  ☆141Updated 5 months ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆129Updated 3 weeks ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆136Updated last year
• alekseyzimin / EviAnn_release
  This is the standalone version of the EviAnn pipeline
  ☆127Updated this week
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆80Updated 3 weeks ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆147Updated last week
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆191Updated last month
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆152Updated 3 weeks ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆161Updated 3 years ago
• wdecoster / chopper
  ☆216Updated last month
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆150Updated 3 weeks ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆187Updated last year