lh3 / pangeneLinks
Constructing a pangenome gene graph
☆203Updated 5 months ago
Alternatives and similar repositories for pangene
Users that are interested in pangene are comparing it to the libraries listed below
Sorting:
- Dfam Transposable Element Tools Docker container.☆101Updated last month
- Pangenome-based genome inference☆153Updated last month
- A list of software for pangenomics☆165Updated last week
- Version 5 of the CAFE phylogenetics software☆158Updated 11 months ago
- source code for EVM☆121Updated last year
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 4 months ago
- Collection of tools for the analysis of CpG data☆102Updated 6 months ago
- Yet another k-mer analyzer☆158Updated 2 weeks ago
- Research release basecalling models and configurations☆117Updated 7 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆190Updated 8 months ago
- An ultra-fast and efficient genomic tool for coverage calculation☆168Updated 9 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆129Updated last month
- accurate LiftOver tool for new genome assemblies☆146Updated last year
- Phased assembly variant caller☆131Updated last year
- Jasmine: SV Merging Across Samples☆236Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆178Updated 2 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆156Updated 6 months ago
- List of genome assembly tools☆90Updated 2 weeks ago
- a tool for inferring species tree from sequencing reads☆156Updated last month
- This is the standalone version of the EviAnn pipeline☆133Updated this week
- A tool for somatic structural variant calling using long reads☆160Updated 2 months ago
- ☆71Updated 5 years ago
- ☆230Updated 11 months ago
- Make colorful identity heatmaps of genomic sequence☆128Updated last year
- High-precision TE Annotator☆146Updated last month
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆155Updated 2 months ago
- TransposonUltimate - a holistic set of tools for transposon identification☆86Updated 3 years ago
- Reference-free profiling of polyploid genomes☆139Updated 3 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 3 months ago