jmonlong / manu-vggafannotLinks
Efficient indexing and querying of annotations in a pangenome graph
☆9Updated 2 weeks ago
Alternatives and similar repositories for manu-vggafannot
Users that are interested in manu-vggafannot are comparing it to the libraries listed below
Sorting:
- A pipeline for genomic variant detection with genome assemblies at population scale☆12Updated 3 weeks ago
- ☆20Updated last week
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 6 years ago
- parallelLastz: Running Lastz in parallel☆16Updated 9 months ago
- Genome Assembly 102☆14Updated 2 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 8 months ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- SINE annotation tool for plant genomes☆17Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated this week
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 9 months ago
- ☆24Updated 6 months ago
- Identification of conserved non-coding sequences in plants☆20Updated last month
- Tandem Repeats Finder: a program to analyze DNA sequences☆15Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 weeks ago
- Genotyping of copy number sensitive allele-specific haplotypes☆15Updated 3 weeks ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Phasing reads with secondary alignments☆18Updated 6 months ago
- The MafFilter genome alignment processor☆18Updated last month
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆18Updated 2 months ago
- T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.☆13Updated last month
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated 3 weeks ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- ☆15Updated 4 years ago
- TD2☆12Updated 2 weeks ago
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- Prefix-renaming FASTA records really fast.☆17Updated last year
- Consensus genome annotation using OMA☆24Updated this week