jmonlong / manu-vggafannotLinks
Efficient indexing and querying of annotations in a pangenome graph
☆10Updated last month
Alternatives and similar repositories for manu-vggafannot
Users that are interested in manu-vggafannot are comparing it to the libraries listed below
Sorting:
- A pipeline for genomic variant detection with genome assemblies at population scale☆12Updated last month
- parallelLastz: Running Lastz in parallel☆16Updated 10 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 6 years ago
- ☆20Updated this week
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- The MafFilter genome alignment processor☆19Updated 2 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 9 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 9 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- ☆24Updated 7 months ago
- Consensus genome annotation using OMA☆26Updated 3 weeks ago
- Genome Assembly 102☆14Updated 2 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆11Updated last year
- Prefix-renaming FASTA records really fast.☆17Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated last month
- ☆16Updated 3 weeks ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 9 months ago
- Everything but the kitchen sink☆11Updated 5 months ago
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated 3 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆19Updated 2 months ago
- Phasing reads with secondary alignments☆19Updated 7 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated last year
- TD2☆13Updated last month
- Extracts subgraphs or components from a graph in GFA format☆23Updated 7 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆14Updated 2 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆9Updated 2 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Updated 4 years ago
- ☆25Updated 10 months ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago