vikshiv / mumemto
Mumemto: multi-MUM and MEM finding across pangenomes
☆59Updated this week
Alternatives and similar repositories for mumemto:
Users that are interested in mumemto are comparing it to the libraries listed below
- ☆74Updated 3 months ago
- Identification of transposable element families from pangenome polymorphisms☆43Updated 5 months ago
- ☆34Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆52Updated 2 weeks ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated last month
- implicit pangenome graph☆51Updated this week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆70Updated last month
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 3 weeks ago
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆28Updated last month
- A tool for evaluating long-read de novo assembly results☆30Updated 4 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆73Updated this week
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆30Updated last month
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆36Updated 3 months ago
- ☆32Updated 4 years ago
- Predict 5mC in PacBio HiFi reads☆36Updated this week
- Show pangenome graphs in an easy way☆54Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month
- ☆26Updated 5 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆35Updated last week
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated last week
- Differential k-mer analysis☆34Updated 11 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- ☆35Updated 10 months ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- TGS scaffolding☆46Updated 3 years ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆24Updated this week