fawaz-dabbaghieh / bubble_gunLinks
☆40Updated 4 months ago
Alternatives and similar repositories for bubble_gun
Users that are interested in bubble_gun are comparing it to the libraries listed below
Sorting:
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- General purpose utility related to GAF files☆29Updated 2 weeks ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆42Updated last year
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Differential k-mer analysis☆38Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated last week
- Better Alignments with Translated HMMER☆23Updated 2 weeks ago
- ☆28Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated last year
- ☆45Updated 2 weeks ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 6 months ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- Linear-time de novo Long Read Assembler☆41Updated last month
- ☆28Updated last year
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆34Updated 2 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 3 weeks ago
- Convert HAL to VG☆23Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 3 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆45Updated 2 months ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 9 months ago
- ☆28Updated 4 months ago
- Long-read aligner to pangenome graphs☆28Updated last year