fawaz-dabbaghieh / bubble_gunLinks
☆41Updated 3 weeks ago
Alternatives and similar repositories for bubble_gun
Users that are interested in bubble_gun are comparing it to the libraries listed below
Sorting:
- General purpose utility related to GAF files☆29Updated last week
- Differential k-mer analysis☆39Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 9 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 8 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Updated last year
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- ☆28Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆40Updated 4 months ago
- Linear-time de novo Long Read Assembler☆41Updated 3 months ago
- ☆28Updated 5 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆27Updated 2 weeks ago
- Improved long-read assembly by preserving contained reads☆30Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆53Updated last month
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 3 weeks ago
- ☆46Updated 2 months ago
- Convert HAL to VG☆23Updated last year
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- Better Alignments with Translated HMMER☆24Updated this week
- Computational Pangenomics☆17Updated 3 years ago
- Long-read aligner to pangenome graphs☆29Updated last year
- recompute GFA link overlaps☆25Updated 3 years ago
- Extracting paths from assembly graphs☆24Updated last year
- Infering ancestral synteny with hierarchical orthologous groups☆38Updated 3 months ago
- Targeted genotyper for complex polymorphic genes☆32Updated last week
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- ☆29Updated 2 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 4 months ago