Alternatives and similar repositories for bubble_gun

Users that are interested in bubble_gun are comparing it to the libraries listed below

• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 3 months ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated 11 months ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆39Updated 11 months ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated 2 months ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 5 years ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 4 months ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last week
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• bcgsc / goldrush
  Linear-time de novo Long Read Assembler
  ☆41Updated 7 months ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆42Updated 11 months ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆34Updated 3 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆37Updated last year
• pierrepeterlongo / back_to_sequences
  ☆45Updated last month
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆39Updated 5 months ago
• at-cg / RAFT
  ☆28Updated last year
• SouthGreenPlatform / panache
  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…
  ☆45Updated 2 years ago
• nadegeguiglielmoni / GraphUnzip
  Unzip assembly graphs with Hi-C data and/or long reads.
  ☆27Updated last year
• pangenome / impg
  implicit pangenome graph
  ☆69Updated last week
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆45Updated 9 months ago
• tprodanov / locityper
  Targeted genotyper for complex polymorphic genes
  ☆21Updated last week
• w-gao / pgv
  A web-based, interactive pangenome visualization tool
  ☆21Updated 2 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated last year
• agshumate / LiftoffTools
  ☆27Updated 2 years ago
• asylvz / SVarp
  Phased structural variant discovery in pangenomes
  ☆36Updated last year
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆28Updated 3 months ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• nextgenusfs / redmask
  Genome assembly soft-masking using Red (REpeat Detector)
  ☆18Updated 6 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated last year
• codeatcg / VRPG
  an interactive visualization and interpretation framework of reference-projected pangenome graphs
  ☆37Updated 7 months ago