fawaz-dabbaghieh / bubble_gun
☆41Updated last month
Alternatives and similar repositories for bubble_gun:
Users that are interested in bubble_gun are comparing it to the libraries listed below
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆37Updated 5 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 3 weeks ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 2 months ago
- Differential k-mer analysis☆34Updated last year
- convert variation graph alignments to coverage maps over nodes☆23Updated last month
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Statistics and analysis for variation graphs☆38Updated 3 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆16Updated 6 years ago
- ☆25Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆24Updated 11 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 6 months ago
- General purpose utility related to GAF files☆22Updated this week
- ☆22Updated 7 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆34Updated 4 months ago
- FastK based version of Merqury☆22Updated this week
- ☆21Updated 5 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- ☆35Updated last year
- ☆41Updated 2 weeks ago
- a broadly applicable tool for automated gene identification and retrieval☆30Updated 3 months ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- the pangenome graph evaluator☆26Updated 3 years ago
- SV calling for diploid assemblies☆26Updated last year
- Linear-time de novo Long Read Assembler☆39Updated last month