fawaz-dabbaghieh / bubble_gunLinks
☆41Updated 2 months ago
Alternatives and similar repositories for bubble_gun
Users that are interested in bubble_gun are comparing it to the libraries listed below
Sorting:
- General purpose utility related to GAF files☆28Updated last week
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 9 months ago
- Differential k-mer analysis☆36Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- ☆28Updated 9 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last week
- Better Alignments with Translated HMMER☆21Updated last week
- Long read aligner for cyclic and acyclic pangenome graphs☆37Updated last year
- ☆25Updated 10 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Targeted genotyper for complex polymorphic genes☆20Updated last week
- Linear-time de novo Long Read Assembler☆41Updated 5 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 weeks ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆28Updated 9 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 3 weeks ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 7 months ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- Statistics and analysis for variation graphs☆41Updated 7 months ago
- Phased structural variant discovery in pangenomes☆34Updated last year
- ☆24Updated 7 months ago
- ☆42Updated last week
- the pangenome graph evaluator☆27Updated 4 years ago
- Convert HAL to VG☆22Updated 11 months ago
- ☆20Updated 3 years ago