pangenome / vcfbubLinks
use variant nesting information to flter overlapping sites from vg deconstruct output
☆31Updated 6 months ago
Alternatives and similar repositories for vcfbub
Users that are interested in vcfbub are comparing it to the libraries listed below
Sorting:
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- SV calling for diploid assemblies☆30Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- ☆38Updated 2 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Updated 2 years ago
- ☆19Updated last week
- Kmer Analysis of Pileups for Genotyping☆35Updated 3 weeks ago
- COsine SImilarity-based Genotyper using pangenomes☆24Updated last week
- ☆38Updated 5 months ago
- ☆30Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆42Updated last year
- SV genotyper for long reads with a variation graph☆15Updated 4 months ago
- ☆31Updated 6 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- Statistics and analysis for variation graphs☆47Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆42Updated last year
- FastK based version of Merqury☆30Updated 3 months ago
- ☆19Updated last year
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- ☆44Updated last year
- Extracting paths from assembly graphs☆24Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Computational Pangenomics☆17Updated 3 years ago
- Domain based annotation of transposable elements☆21Updated 2 months ago