use variant nesting information to flter overlapping sites from vg deconstruct output
☆37Jun 12, 2025Updated last year
Alternatives and similar repositories for vcfbub
Users that are interested in vcfbub are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Jun 15, 2026Updated 4 months ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 9 months ago
- Pangenome-based genome inference☆184Updated this week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆140Sep 8, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15May 3, 2023Updated 3 years ago
- Graph Variant Benchmarking for the HPRC2☆11May 26, 2026Updated 5 months ago
- ☆15Jun 29, 2021Updated 5 years ago
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- A tool for pangenome graph-based phased diploid genome inference.☆10Sep 19, 2026Updated last month
- ☆33Jul 13, 2026Updated 3 months ago
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 4 years ago
- Phased structural variant discovery in pangenomes☆44Oct 9, 2026Updated 3 weeks ago
- ☆102Apr 22, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated 2 months ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆251Sep 16, 2026Updated last month
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated last year
- ☆32Oct 7, 2026Updated 3 weeks ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- ☆31Mar 27, 2024Updated 2 years ago
- ☆19May 10, 2023Updated 3 years ago
- ☆25Sep 22, 2026Updated last month
- linearize and simplify variation graphs using blocked partial order alignment☆67Aug 21, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- implicit pangenome graph☆114Updated this week
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 4 months ago
- Statistics and analysis for variation graphs☆57Dec 17, 2024Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 8 months ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 6 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆63Sep 6, 2025Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆40Oct 12, 2026Updated 2 weeks ago
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆24Sep 9, 2026Updated last month
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆41Oct 17, 2026Updated 2 weeks ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago