Alternatives and similar repositories for vcfbub

Users that are interested in vcfbub are comparing it to the libraries listed below

• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 4 years ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆19Updated 7 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 9 months ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆13Updated 2 years ago
• davidebolo1993 / cosigt
  ☆20Updated this week
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆28Updated last year
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆31Updated 2 weeks ago
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆34Updated 3 years ago
• MoinSebi / gfa2bin
  ☆24Updated 7 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆36Updated last year
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆36Updated 2 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• mrvollger / NucFreq
  ☆37Updated last year
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 4 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated 11 months ago
• at-cg / RAFT
  ☆25Updated 10 months ago
• marbl / training
  Genome Assembly 102
  ☆14Updated 2 months ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 7 months ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• hitbc / gcSV
  ☆21Updated 4 months ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆38Updated 9 months ago
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆30Updated 3 years ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 2 months ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• asylvz / SVarp
  Phased structural variant discovery in pangenomes
  ☆34Updated last year
• gymrek-lab / LongTR
  Tandem repeat genotyping with long reads
  ☆28Updated last month