wjwei-handsome / wgatools
Whole Genome Alignment Tools
☆188Updated this week
Alternatives and similar repositories for wgatools:
Users that are interested in wgatools are comparing it to the libraries listed below
- ☆91Updated last week
- An ultra-fast and efficient genomic tool for coverage calculation☆146Updated last month
- ☆119Updated 2 weeks ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆210Updated 2 weeks ago
- accurate LiftOver tool for new genome assemblies☆125Updated 8 months ago
- A bioinformatics tool for working with modified bases☆185Updated last week
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆134Updated 3 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆303Updated 2 weeks ago
- ☆185Updated last month
- ☆204Updated 3 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆219Updated this week
- Jasmine: SV Merging Across Samples☆210Updated 4 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- A tool for somatic structural variant calling using long reads☆127Updated 2 weeks ago
- Genome browser and variant annotation☆301Updated 3 weeks ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆162Updated last week
- Earl Grey: A fully automated TE curation and annotation pipeline☆166Updated 2 weeks ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆149Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆222Updated 3 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆127Updated 3 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆137Updated 3 years ago
- Any Way to Show Multi genomic Synteny☆181Updated this week
- Generate an interactive dot plot from mummer or minimap alignments☆200Updated last year
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆179Updated 3 weeks ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆215Updated 9 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆127Updated last week
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆206Updated last week
- Pangenome-based genome inference☆128Updated last week
- List of genome assembly tools☆65Updated 3 weeks ago
- Pairwise whole genome aligner☆151Updated 2 weeks ago