Whole Genome Alignment Tools
☆225Nov 6, 2025Updated 9 months ago
Alternatives and similar repositories for wgatools
Users that are interested in wgatools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- bioinformatics toolkit in rust☆107Updated this week
- crussmap is a faster tool to convert genome coordinates between difference reference assemblies.☆24May 4, 2023Updated 3 years ago
- implicit pangenome graph☆110Aug 8, 2026Updated last week
- Adata Viewer: Head/Less/Shape h5ad file in terminal☆12Updated this week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆61Jul 5, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆18Jan 29, 2025Updated last year
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Aug 9, 2026Updated last week
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Detecting multi-genome synteny using minimizer graph mapping☆115Jun 12, 2026Updated 2 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆134Jul 29, 2026Updated 2 weeks ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆198Feb 10, 2026Updated 6 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆138Updated this week
- convert PAF format to CHAIN format☆36May 14, 2025Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated 3 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 3 months ago
- Fast and exact gap-affine partial order alignment☆70Apr 25, 2026Updated 3 months ago
- expressions on VCFs☆93Mar 17, 2026Updated 5 months ago
- Genome browser and variant annotation☆397Jun 25, 2026Updated last month
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This is the standalone version of the EviAnn pipeline☆183Updated this week
- Kmer Analysis of Pileups for Genotyping☆40Jul 16, 2026Updated last month
- A genome completeness evaluation tool based on miniprot☆260Updated this week
- ☆102Apr 22, 2024Updated 2 years ago
- Simple pileup-based variant caller☆96Apr 25, 2025Updated last year
- my personal blog by astro☆25Mar 26, 2025Updated last year
- Pangenome-based genome inference☆177Aug 6, 2026Updated last week
- Pangenome-Informed Genome Assembly (PIGA) workflow for population-scale diploid genome assembly☆41Apr 16, 2026Updated 4 months ago
- gia: Genomic Interval Arithmetic☆67Aug 21, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆164Apr 13, 2026Updated 4 months ago
- SRF: Satellite Repeat Finder☆108Jan 8, 2024Updated 2 years ago
- Genome size estimation from long read overlaps☆92Aug 4, 2026Updated 2 weeks ago
- base-level dotplots from PAF alignments☆36Sep 18, 2025Updated 10 months ago
- A TUI application for monitoring and managing SLURM jobs.☆110Nov 24, 2025Updated 8 months ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆249Jul 23, 2026Updated 3 weeks ago