wjwei-handsome / wgatools

Related projects ⓘ

Alternatives and complementary repositories for wgatools

• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆105Updated last month
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆108Updated last month
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆67Updated last month
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆111Updated this week
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆108Updated last month
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆105Updated 5 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆81Updated 7 months ago
• daewoooo / SVbyEye
  ☆69Updated last month
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆85Updated 2 weeks ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆72Updated 8 months ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆84Updated last month
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆108Updated 2 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆85Updated 2 weeks ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆97Updated 2 weeks ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆110Updated 3 months ago
• epi2me-labs / modbam2bed
  ☆47Updated 2 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 5 months ago
• rhysf / Synima
  Synteny Imager
  ☆60Updated 2 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆77Updated 3 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆90Updated 5 months ago
• PacificBiosciences / jasmine
  Predict 5mC in PacBio HiFi reads
  ☆32Updated last week
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆47Updated 4 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• epi2me-labs / wf-basecalling
  ☆33Updated 2 weeks ago
• mapleforest / HaploMerger2
  ☆42Updated 7 years ago
• DyogenIBENS / Agora
  Algorithm For Gene Order Reconstruction in Ancestors
  ☆70Updated this week
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆93Updated 9 months ago
• kjenike / panagram
  ☆57Updated 3 weeks ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆58Updated last year
• wdecoster / chopper
  ☆150Updated 2 months ago