at-cg / minichainLinks
Long-read aligner to pangenome graphs
☆29Updated last year
Alternatives and similar repositories for minichain
Users that are interested in minichain are comparing it to the libraries listed below
Sorting:
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- Convert HAL to VG☆23Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- convert variation graph alignments to coverage maps over nodes☆26Updated 3 weeks ago
- General purpose utility related to GAF files☆29Updated last month
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Differential k-mer analysis☆39Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 6 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated last month
- ☆26Updated 4 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- AlfaPang builds pangenome graphs without alignments or references.☆14Updated last month
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- ☆16Updated 3 years ago
- ☆28Updated last year
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- ☆28Updated 4 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Prefix-renaming FASTA records really fast.☆16Updated last year
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆27Updated last week
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆21Updated last month
- ☆30Updated last year
- Scaffolding with Ultralong Reads☆15Updated 5 years ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- Genome Assembly 102☆17Updated 8 months ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- ☆41Updated last week