Statistics and analysis for variation graphs
☆53Dec 17, 2024Updated last year
Alternatives and similar repositories for gretl
Users that are interested in gretl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 7 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 6 months ago
- ☆18Jan 29, 2025Updated last year
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- COsine SImilarity-based Genotyper using pangenomes☆36Updated this week
- implicit pangenome graph☆110Aug 8, 2026Updated 3 weeks ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆138Aug 12, 2026Updated 3 weeks ago
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 10 months ago
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 4 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 11 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 10 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- ☆102Apr 22, 2024Updated 2 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 4 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆19May 10, 2023Updated 3 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆136Jul 29, 2026Updated last month
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated last week
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- ☆31Mar 27, 2024Updated 2 years ago
- Enumerating bubbles in pangenome graphs☆16Aug 26, 2026Updated last week
- Fast and exact gap-affine partial order alignment☆71Apr 25, 2026Updated 4 months ago
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 5 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆115Aug 20, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆250Aug 21, 2026Updated last week
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- plane sweep filtering genome alignments☆24Jul 25, 2026Updated last month
- use variant nesting information to flter overlapping sites from vg deconstruct output☆37Jun 12, 2025Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Updated this week
- Alignment-free pangenome browser and analysis toolkit☆85May 18, 2026Updated 3 months ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago