chfi / gfaestusLinks
GFA visualizer, GPU-accelerated using Vulkan
☆72Updated 2 years ago
Alternatives and similar repositories for gfaestus
Users that are interested in gfaestus are comparing it to the libraries listed below
Sorting:
- Efficient low-divergence mapping of long reads in minimizer space☆67Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- Statistics and analysis for variation graphs☆41Updated 7 months ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆43Updated 2 years ago
- implicit pangenome graph☆65Updated last week
- Optimized sequence graph implementations for graph genomics☆34Updated this week
- Detecting multi-genome synteny using minimizer graph mapping☆79Updated 2 months ago
- ☆30Updated 2 months ago
- Pan-Genomic Matching Statistics☆52Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆49Updated 3 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆58Updated 2 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 7 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Identification of transposable element families from pangenome polymorphisms☆48Updated last month
- ☆67Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆39Updated 3 months ago
- ☆36Updated last week
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆35Updated 2 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆101Updated last week
- vcfdist: Accurately benchmarking phased variant calls☆82Updated last week
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆51Updated 3 weeks ago
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆54Updated 2 weeks ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last week