Alternatives and similar repositories for gfaestus

Users that are interested in gfaestus are comparing it to the libraries listed below

• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆58Updated last month
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆37Updated 3 months ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆50Updated last year
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆45Updated 8 months ago
• ekimb / mapquik
  Efficient low-divergence mapping of long reads in minimizer space
  ☆67Updated last year
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆53Updated last year
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆55Updated 3 years ago
• pangenome / impg
  implicit pangenome graph
  ☆67Updated 2 weeks ago
• mrvollger / SafFire
  ☆30Updated 3 months ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• univieCUBE / gepard
  Genome Pair Rapid Dotter
  ☆67Updated 3 years ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• ggonnella / gfaviz
  Graphical interactive tool for the visualization of sequence graphs in GFA format.
  ☆71Updated 6 years ago
• seryrzu / unialigner
  ☆67Updated last year
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆108Updated last month
• maickrau / MBG
  ☆63Updated 2 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆54Updated last year
• lh3 / longdust
  Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome
  ☆49Updated 3 weeks ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆83Updated last month
• ruanjue / bsalign
  Banded Striped DNA Sequence Alignment
  ☆47Updated 2 years ago
• maickrau / ribotin
  ☆36Updated last month
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆59Updated this week
• ablab / VerityMap
  ☆36Updated 2 years ago
• kjenike / panagram
  ☆64Updated last month
• GeneDx / pgr-tk
  ☆100Updated last year
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆44Updated 2 months ago
• lh3 / lv89
  C implementation of the Landau-Vishkin algorithm
  ☆35Updated 3 years ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated 3 weeks ago