chfi / gfaestusLinks
GFA visualizer, GPU-accelerated using Vulkan
☆75Updated 3 years ago
Alternatives and similar repositories for gfaestus
Users that are interested in gfaestus are comparing it to the libraries listed below
Sorting:
- implicit pangenome graph☆88Updated this week
- ☆31Updated 9 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆60Updated 6 months ago
- Statistics and analysis for variation graphs☆48Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 8 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- Efficient low-divergence mapping of long reads in minimizer space☆70Updated 2 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆69Updated 3 months ago
- Segmental Duplication Assembler (SDA).☆43Updated 2 years ago
- ☆46Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Show pangenome graphs in an easy way☆58Updated 6 months ago
- ☆38Updated last month
- ☆101Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆53Updated 11 months ago
- Optimized sequence graph implementations for graph genomics☆34Updated this week
- TGS scaffolding☆47Updated 4 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆72Updated 6 years ago
- Call select base modifications in PacBio HiFi reads☆15Updated 2 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Assemblies from HPP Year 1 production☆80Updated 2 years ago
- convert PAF format to CHAIN format☆34Updated 8 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 9 months ago
- ☆35Updated 5 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆38Updated last year
- ☆78Updated 5 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 2 months ago