base-accurate DNA sequence alignments using WFA and mashmap3
☆212Mar 20, 2026Updated last week
Alternatives and similar repositories for wfmash
Users that are interested in wfmash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆235Feb 10, 2026Updated last month
- the pangenome graph builder☆488Mar 14, 2026Updated last week
- alignment to variation graph inducer☆158Mar 6, 2026Updated 3 weeks ago
- linearize and simplify variation graphs using blocked partial order alignment☆61Feb 25, 2026Updated last month
- WFA-lib: Wavefront alignment algorithm library v2☆210Mar 18, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆102Apr 22, 2024Updated last year
- A genome completeness evaluation tool based on miniprot☆237Sep 18, 2025Updated 6 months ago
- implicit pangenome graph☆98Updated this week
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆384Mar 11, 2026Updated 2 weeks ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆110Feb 28, 2026Updated last month
- bioinformatics toolkit in rust☆101Feb 15, 2026Updated last month
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆189Oct 15, 2025Updated 5 months ago
- Constructing a pangenome gene graph☆205Aug 11, 2025Updated 7 months ago
- Assembled Genomes Compressor☆178Nov 25, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- Synteny and Rearrangement Identifier☆454Mar 17, 2026Updated last week
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 6 months ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆119Dec 13, 2024Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆122Mar 20, 2026Updated last week
- ☆286Dec 29, 2025Updated 2 months ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pairwise whole genome aligner☆233Mar 2, 2026Updated 3 weeks ago
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last month
- Simple pileup-based variant caller☆95Apr 25, 2025Updated 11 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 7 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 4 years ago
- SRF: Satellite Repeat Finder☆103Jan 8, 2024Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 9 months ago
- Align proteins to genomes with splicing and frameshift☆396Jan 5, 2026Updated 2 months ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56May 29, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Sequence-to-graph mapper and graph generator☆473Aug 11, 2025Updated 7 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆757Mar 18, 2025Updated last year
- Fast and accurate coordinate conversion between assemblies☆118Oct 9, 2025Updated 5 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 9 months ago
- Whole Genome Alignment Tools☆220Nov 6, 2025Updated 4 months ago
- Long read / genome alignment software☆312Dec 16, 2025Updated 3 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆247Dec 16, 2025Updated 3 months ago