waveygang / wfmashView external linksLinks
base-accurate DNA sequence alignments using WFA and mashmap3
☆210Jan 30, 2026Updated 2 weeks ago
Alternatives and similar repositories for wfmash
Users that are interested in wfmash are comparing it to the libraries listed below
Sorting:
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆234Updated this week
- alignment to variation graph inducer☆157Jan 20, 2026Updated 3 weeks ago
- the pangenome graph builder☆478Dec 8, 2025Updated 2 months ago
- WFA-lib: Wavefront alignment algorithm library v2☆208Feb 8, 2026Updated last week
- linearize and simplify variation graphs using blocked partial order alignment☆60Jul 22, 2025Updated 6 months ago
- ☆101Apr 22, 2024Updated last year
- implicit pangenome graph☆88Updated this week
- Constructing a pangenome gene graph☆204Aug 11, 2025Updated 6 months ago
- bioinformatics toolkit in rust☆93Sep 28, 2025Updated 4 months ago
- Assembled Genomes Compressor☆178Nov 25, 2024Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆381Feb 6, 2026Updated last week
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆110Jan 26, 2026Updated 2 weeks ago
- Synteny and Rearrangement Identifier☆447Apr 29, 2025Updated 9 months ago
- Efficient low-divergence mapping of long reads in minimizer space☆70Oct 7, 2023Updated 2 years ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆184Oct 15, 2025Updated 4 months ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆119Dec 13, 2024Updated last year
- A genome completeness evaluation tool based on miniprot☆233Sep 18, 2025Updated 4 months ago
- Simple pileup-based variant caller☆94Apr 25, 2025Updated 9 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- A fast approximate aligner for long DNA sequences☆286Oct 11, 2024Updated last year
- ☆284Dec 29, 2025Updated last month
- Whole Genome Alignment Tools☆213Nov 6, 2025Updated 3 months ago
- SRF: Satellite Repeat Finder☆101Jan 8, 2024Updated 2 years ago
- Align proteins to genomes with splicing and frameshift☆395Jan 5, 2026Updated last month
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last week
- Pairwise whole genome aligner☆227Jan 21, 2026Updated 3 weeks ago
- Sequence-to-graph mapper and graph generator☆470Aug 11, 2025Updated 6 months ago
- Fast and accurate coordinate conversion between assemblies☆118Oct 9, 2025Updated 4 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆119Feb 3, 2026Updated last week
- Long read / genome alignment software☆311Dec 16, 2025Updated last month
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆736Mar 18, 2025Updated 10 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 8 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 4 years ago
- k-mer based assembly evaluation☆338Jun 28, 2024Updated last year
- ☆58Dec 12, 2023Updated 2 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188May 17, 2024Updated last year
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆184Sep 19, 2024Updated last year