waveygang / wfmash
base-accurate DNA sequence alignments using WFA and mashmap3
☆186Updated this week
Alternatives and similar repositories for wfmash:
Users that are interested in wfmash are comparing it to the libraries listed below
- A genome completeness evaluation tool based on miniprot☆209Updated this week
- Nanopore data assembler☆151Updated 3 years ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆149Updated last month
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆161Updated last year
- Constructing a pangenome gene graph☆187Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆181Updated 2 months ago
- Structural Variant Identification Method using Genome Assemblies☆113Updated 2 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆128Updated last week
- Pangenome-based genome inference☆128Updated 3 weeks ago
- a short-read polishing tool for long-read assemblies☆158Updated 11 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆225Updated 8 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆145Updated 2 months ago
- Comparison of multiple long read datasets☆128Updated last month
- ☆145Updated 2 weeks ago
- A genomic k-mer counter (and sequence utility) with nice features.☆135Updated 2 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- ☆110Updated this week
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 3 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆205Updated 8 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆130Updated last month
- Research release basecalling models and configurations☆110Updated 10 months ago
- Assembled Genomes Compressor☆162Updated 5 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 7 months ago
- Aligns short reads using dynamic seed size with strobemers☆168Updated 3 weeks ago
- Quality control tools for nanopore sequencing data☆104Updated 6 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated 11 months ago
- Phased assembly variant caller☆112Updated 5 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆146Updated 2 months ago
- Jasmine: SV Merging Across Samples☆211Updated 4 months ago
- Yet another k-mer analyzer☆133Updated last year