waveygang / wfmash
base-accurate DNA sequence alignments using WFA and mashmap3
☆186Updated this week
Alternatives and similar repositories for wfmash:
Users that are interested in wfmash are comparing it to the libraries listed below
- Nanopore data assembler☆147Updated 3 years ago
- A genome completeness evaluation tool based on miniprot☆204Updated last month
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆145Updated 2 weeks ago
- haplotypic duplication identification tool☆234Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆160Updated last year
- Comparison of multiple long read datasets☆125Updated 2 weeks ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆179Updated last month
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- Constructing a pangenome gene graph☆184Updated 2 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆108Updated 2 years ago
- Long read aligner☆115Updated last year
- A fast K-mer counter for high-fidelity shotgun datasets☆124Updated 2 months ago
- a short-read polishing tool for long-read assemblies☆156Updated 10 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆225Updated 8 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆146Updated 2 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 3 years ago
- Yet another Hi-C scaffolding tool☆143Updated 5 months ago
- Fast and accurately polish the genome generated by long reads.☆221Updated 3 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆203Updated 7 months ago
- ☆183Updated 3 weeks ago
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆130Updated 3 weeks ago
- Jasmine: SV Merging Across Samples☆210Updated 3 months ago
- Quality control tools for nanopore sequencing data☆103Updated 5 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆133Updated last month
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆128Updated this week
- High-precision TE Annotator☆109Updated this week
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆119Updated 3 weeks ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆142Updated last month
- Yet another k-mer analyzer☆133Updated last year