thegenemyers / FASTGA
Pairwise whole genome aligner
☆147Updated last month
Alternatives and similar repositories for FASTGA:
Users that are interested in FASTGA are comparing it to the libraries listed below
- A genome completeness evaluation tool based on miniprot☆190Updated 4 months ago
- Constructing a pangenome gene graph☆179Updated 7 months ago
- List of genome assembly tools☆58Updated 2 weeks ago
- Jasmine: SV Merging Across Samples☆202Updated last month
- base-accurate DNA sequence alignments using WFA and mashmap3☆182Updated this week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆156Updated last year
- Research release basecalling models and configurations☆107Updated 7 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆155Updated last week
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆135Updated 3 weeks ago
- A tool for somatic structural variant calling using long reads☆114Updated 3 weeks ago
- ☆84Updated last month
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- a long read simulator that can imitate many types of read problems☆200Updated 6 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated last week
- a tool for inferring species tree from sequencing reads☆146Updated this week
- ☆169Updated this week
- Yet another k-mer analyzer☆126Updated 10 months ago
- ☆131Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆109Updated last month
- Any Way to Show Multi genomic Synteny☆173Updated 3 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆119Updated 3 weeks ago
- Aligns short reads using dynamic seed size with strobemers☆164Updated last week
- Pangenome-based genome inference☆121Updated this week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆140Updated last year
- accurate LiftOver tool for new genome assemblies☆119Updated 6 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆174Updated 3 weeks ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆116Updated last week
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆155Updated last week
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆155Updated last week
- Assembled Genomes Compressor☆159Updated 2 months ago