thegenemyers / FASTGALinks
Pairwise whole genome aligner
☆196Updated 2 weeks ago
Alternatives and similar repositories for FASTGA
Users that are interested in FASTGA are comparing it to the libraries listed below
Sorting:
- base-accurate DNA sequence alignments using WFA and mashmap3☆206Updated last month
- Constructing a pangenome gene graph☆196Updated 2 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆150Updated 3 weeks ago
- Pangenome-based genome inference☆149Updated 2 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆127Updated 3 months ago
- List of genome assembly tools☆80Updated 3 weeks ago
- accurate LiftOver tool for new genome assemblies☆137Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆122Updated last month
- Research release basecalling models and configurations☆115Updated 5 months ago
- A list of software for pangenomics☆134Updated last week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆173Updated last year
- Dfam Transposable Element Tools Docker container.☆100Updated last month
- ☆141Updated 5 months ago
- ☆168Updated 2 weeks ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 5 months ago
- ☆218Updated 9 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆162Updated this week
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆105Updated 5 months ago
- Assembled Genomes Compressor☆169Updated 11 months ago
- Yet another k-mer analyzer☆149Updated 3 weeks ago
- A tool for somatic structural variant calling using long reads☆147Updated last week
- Aligns short reads using dynamic seed size with strobemers☆181Updated this week
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆206Updated 3 weeks ago
- a tool for inferring species tree from sequencing reads☆152Updated 3 weeks ago
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated 3 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆113Updated last week
- Tools for plotting methylation data in various ways☆162Updated 2 weeks ago
- ☆216Updated last month
- Hierarchical Alignment Format☆172Updated last month
- A complete diploid human genome☆136Updated last month