Alternatives and similar repositories for FASTGA

Users that are interested in FASTGA are comparing it to the libraries listed below

• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆210Updated last week
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆204Updated 6 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆155Updated 2 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆173Updated 2 weeks ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆132Updated 2 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆160Updated 3 months ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆158Updated last month
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆109Updated last year
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆157Updated last week
• ComparativeGenomicsToolkit / hal
  Hierarchical Alignment Format
  ☆174Updated 2 weeks ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆148Updated last year
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆191Updated 9 months ago
• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆192Updated this week
• jtlovell / GENESPACE
  ☆232Updated last year
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆178Updated 2 years ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆93Updated last week
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆156Updated 2 months ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆168Updated last week
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆162Updated 11 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 8 months ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆101Updated last month
• marbl / ModDotPlot
  ☆180Updated this week
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆248Updated last month
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆218Updated 5 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆233Updated 4 months ago
• wdecoster / chopper
  ☆232Updated last week
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆170Updated 4 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆132Updated last year
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆128Updated 2 months ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆247Updated 3 weeks ago