thegenemyers / FASTGALinks
Pairwise whole genome aligner
☆207Updated last week
Alternatives and similar repositories for FASTGA
Users that are interested in FASTGA are comparing it to the libraries listed below
Sorting:
- base-accurate DNA sequence alignments using WFA and mashmap3☆208Updated last month
- Pangenome-based genome inference☆149Updated this week
- Constructing a pangenome gene graph☆198Updated 3 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆150Updated 2 weeks ago
- Aligns short reads using dynamic seed size with strobemers☆181Updated last week
- ☆219Updated 2 weeks ago
- Visualise and analyse nanopore (ONT) raw signals☆124Updated 2 months ago
- ☆219Updated 9 months ago
- A tool for somatic structural variant calling using long reads☆150Updated 3 weeks ago
- List of genome assembly tools☆83Updated 2 weeks ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆164Updated last week
- Yet another k-mer analyzer☆151Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆190Updated 6 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated 4 months ago
- Dfam Transposable Element Tools Docker container.☆101Updated 2 weeks ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆106Updated 5 months ago
- A list of software for pangenomics☆142Updated 2 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆176Updated last year
- Read Until client library for Nanopore Sequencing☆106Updated last year
- accurate LiftOver tool for new genome assemblies☆137Updated last year
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆209Updated last week
- Whole Genome Alignment Tools☆211Updated last week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆127Updated last week
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- A genome completeness evaluation tool based on miniprot☆228Updated 2 months ago
- Research release basecalling models and configurations☆116Updated 5 months ago
- a tool for inferring species tree from sequencing reads☆153Updated last month
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆147Updated 9 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆195Updated 2 months ago
- ☆119Updated 2 weeks ago