Alternatives and similar repositories for FASTGA:

Users that are interested in FASTGA are comparing it to the libraries listed below

• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆65Updated this week
• epi2me-labs / wf-transcriptomes
  ☆91Updated 2 weeks ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• wdecoster / chopper
  ☆185Updated last week
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆129Updated this week
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆161Updated last year
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆124Updated 8 months ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆149Updated 2 months ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆92Updated last month
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆111Updated last week
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆186Updated this week
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆187Updated last month
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆211Updated 4 months ago
• marbl / ModDotPlot
  ☆145Updated 2 weeks ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆128Updated 2 weeks ago
• jtlovell / GENESPACE
  ☆206Updated 3 months ago
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆180Updated last month
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆209Updated last week
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆128Updated this week
• ncbi / egapx
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆133Updated last month
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆104Updated 7 months ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆185Updated 2 weeks ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆110Updated 10 months ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆81Updated 3 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆114Updated last week
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆99Updated last year
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆181Updated 2 months ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆112Updated 5 months ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆145Updated 2 months ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆149Updated 2 years ago