colindaven / awesome-pangenomes

Related projects ⓘ

Alternatives and complementary repositories for awesome-pangenomes

• daewoooo / SVbyEye
  ☆69Updated last month
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆81Updated 7 months ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆53Updated 2 years ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆64Updated 3 weeks ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆67Updated 3 years ago
• rhysf / Synima
  Synteny Imager
  ☆60Updated 2 months ago
• mapleforest / HaploMerger2
  ☆42Updated 7 years ago
• kjenike / panagram
  ☆57Updated 3 weeks ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 5 months ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆41Updated 2 months ago
• PacificBiosciences / jasmine
  Predict 5mC in PacBio HiFi reads
  ☆32Updated last week
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆111Updated this week
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆33Updated 2 years ago
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆85Updated 2 weeks ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆90Updated 5 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆33Updated 2 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆108Updated last month
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆39Updated 2 months ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆41Updated 8 months ago
• enormandeau / gawn
  Genome Annotation Without Nightmares
  ☆43Updated last year
• shingocat / lrscaf
  TGS scaffolding
  ☆45Updated 2 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated last year
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆59Updated 3 years ago
• santiagosnchez / vcf2fasta
  Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
  ☆46Updated last month
• shilpagarg / DipAsm
  ☆77Updated 4 years ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆43Updated last week
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆83Updated 2 years ago
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆45Updated last year