colindaven / awesome-pangenomesLinks
A list of software for pangenomics
☆165Updated 2 weeks ago
Alternatives and similar repositories for awesome-pangenomes
Users that are interested in awesome-pangenomes are comparing it to the libraries listed below
Sorting:
- Pangenome-based genome inference☆152Updated 3 weeks ago
- ☆144Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆116Updated last month
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆116Updated 2 weeks ago
- Collection of tools for the analysis of CpG data☆102Updated 5 months ago
- Pipeline to convert a haploid assembly into diploid☆108Updated 11 months ago
- This is the standalone version of the EviAnn pipeline☆134Updated last week
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆129Updated 3 weeks ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 3 months ago
- Constructing a pangenome gene graph☆201Updated 4 months ago
- ☆121Updated last month
- Phased assembly variant caller☆130Updated last year
- accurate LiftOver tool for new genome assemblies☆145Updated last year
- Structural Variant Identification Method using Genome Assemblies☆129Updated 3 years ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Updated last month
- Neural network classification of TE☆97Updated 2 months ago
- Simple pileup-based variant caller☆95Updated 8 months ago
- Make colorful identity heatmaps of genomic sequence☆128Updated last year
- NLR-Annotator upload☆75Updated 2 years ago
- Dfam Transposable Element Tools Docker container.☆101Updated last week
- source code for EVM☆119Updated last year
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆109Updated 3 weeks ago
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- Reference-free profiling of polyploid genomes☆137Updated 2 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆101Updated last month
- ☆71Updated 5 years ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆86Updated 8 months ago
- Application of pan-genome for population☆116Updated 2 months ago