bcgsc / ntSyntLinks
Detecting multi-genome synteny using minimizer graph mapping
β79Updated 3 months ago
Alternatives and similar repositories for ntSynt
Users that are interested in ntSynt are comparing it to the libraries listed below
Sorting:
- Mumemto: multi-MUM and MEM finding across pangenomesβ103Updated 3 weeks ago
- πͺ‘Correct and scaffold assemblies using long readsβ56Updated last year
- TSEBRA: Transcript Selector for BRAKERβ47Updated 8 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphsβ111Updated this week
- Evaluate variant calls and its combination with k-mer multiplicityβ67Updated 2 years ago
- β63Updated 2 weeks ago
- A organelle de novo genome assembly toolkitβ62Updated 5 months ago
- βοΈ Genome assembly polishing & SNV detectionβ69Updated last month
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.β41Updated 3 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio methodβ45Updated 8 months ago
- Identification of transposable element families from pangenome polymorphismsβ52Updated 2 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.β43Updated 3 weeks ago
- STAG: Species Tree from All Genesβ34Updated 6 years ago
- β116Updated this week
- k-mer learning materialsβ73Updated 5 months ago
- A tool for evaluate long-read de novo assembly resultsβ48Updated 11 months ago
- A Nextflow pipeline for evaluating assembly qualityβ37Updated 2 weeks ago
- πGenome assembly scaffolder using minimizer graphsβ84Updated 10 months ago
- Graph-based assembly phasingβ85Updated 3 months ago
- Hybrid error correction of long reads using colored de Bruijn graphsβ102Updated 10 months ago
- β32Updated 4 years ago
- Splitting of sequence reads by internal adapter sequence searchβ51Updated 2 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in Rβ74Updated 4 years ago
- reference-based long read assemblies of bacterial genomesβ50Updated 4 years ago
- Interactive quality assessment of genome assembliesβ104Updated 3 months ago
- Statistics and analysis for variation graphsβ45Updated 7 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elementsβ75Updated this week
- Split k-mer analysis β version 2β87Updated 2 weeks ago
- A program for assessing the T2T genome continuityβ83Updated last month
- Large genome reassembly based on Hi-C data, continuation of GRAALβ41Updated last year