bcgsc / ntSyntLinks
Detecting multi-genome synteny using minimizer graph mapping
☆80Updated 2 weeks ago
Alternatives and similar repositories for ntSynt
Users that are interested in ntSynt are comparing it to the libraries listed below
Sorting:
- Mumemto: multi-MUM and MEM finding across pangenomes☆108Updated last month
- A organelle de novo genome assembly toolkit☆69Updated 6 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 9 months ago
- 🪡Correct and scaffold assemblies using long reads☆55Updated last year
- ☆64Updated last month
- ✏️ Genome assembly polishing & SNV detection☆71Updated 2 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 4 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated 2 weeks ago
- Graph-based assembly phasing☆86Updated 3 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆76Updated last week
- ☆117Updated this week
- Identification of transposable element families from pangenome polymorphisms☆53Updated 2 months ago
- k-mer learning materials☆74Updated 6 months ago
- Call select base modifications in PacBio HiFi reads☆13Updated 6 months ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆49Updated 5 months ago
- A Nextflow pipeline for evaluating assembly quality☆37Updated last week
- A program for assessing the T2T genome continuity☆83Updated last week
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆43Updated last month
- Split k-mer analysis – version 2☆88Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆103Updated 11 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆90Updated last year
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆49Updated 9 months ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 5 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Statistics and analysis for variation graphs☆45Updated 8 months ago