bcgsc / ntSyntLinks
Detecting multi-genome synteny using minimizer graph mapping
β81Updated last month
Alternatives and similar repositories for ntSynt
Users that are interested in ntSynt are comparing it to the libraries listed below
Sorting:
- Mumemto: multi-MUM and MEM finding across pangenomesβ111Updated 2 months ago
- πͺ‘Correct and scaffold assemblies using long readsβ55Updated 2 weeks ago
- TSEBRA: Transcript Selector for BRAKERβ48Updated 10 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphsβ110Updated last month
- β66Updated 2 weeks ago
- β117Updated this week
- TEtrimmer: a novel tool to automate manual curation of transposable elementsβ76Updated 2 weeks ago
- A organelle de novo genome assembly toolkitβ69Updated 6 months ago
- Graph-based assembly phasingβ87Updated 4 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.β44Updated 5 months ago
- Hybrid error correction of long reads using colored de Bruijn graphsβ104Updated 2 weeks ago
- Show pangenome graphs in an easy wayβ56Updated last month
- A program for assessing the T2T genome continuityβ84Updated this week
- FastOMA is a scalable software package to infer orthology relationship.β82Updated 2 weeks ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.β44Updated 2 months ago
- A Nextflow pipeline for evaluating assembly qualityβ37Updated this week
- βοΈ Genome assembly polishing & SNV detectionβ70Updated 2 months ago
- Splitting of sequence reads by internal adapter sequence searchβ51Updated 2 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).β92Updated last year
- Evaluate variant calls and its combination with k-mer multiplicityβ67Updated 2 years ago
- A tool for evaluate long-read de novo assembly resultsβ48Updated last year
- Structural Variant Identification Method using Genome Assembliesβ123Updated 3 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvementβ69Updated last week
- Read, manipulate and visualize 'Pairwise mApping Format' data in Rβ73Updated 4 years ago
- Identification of transposable element families from pangenome polymorphismsβ53Updated 3 months ago
- k-mer learning materialsβ74Updated 7 months ago
- Pipeline to convert a haploid assembly into diploidβ103Updated 7 months ago
- TGS scaffoldingβ46Updated 3 years ago
- β79Updated 2 months ago
- STAG: Species Tree from All Genesβ34Updated 6 years ago